[cudamapper] Add anchor chain output functions to chainer_utils.cuh.#590

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edawson wants to merge 29 commits intoNVIDIA-Genomics-Research:devfrom edawson:anchor-backtrace-io

+714-3

Commits on Oct 19, 2020

[cudamapper] Add anchor chain output functions to chainer_utils.cuh.
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[cudamapper] Add anchor chain trace for RLE and add anchor chain start calculation
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[cudamapper] Clean up unnecessary functions in chainer_utils.
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Commits on Oct 20, 2020

[cudamapper] Add tests for allocating anchor chains in chainer_utils. However, tests fail because the allocator used in testing can't actually allocate memory.
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Add tests for chainerutils.
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Commits on Oct 22, 2020

Commits on Oct 27, 2020

Commits on Oct 28, 2020

Commits on Nov 5, 2020

Update from dev-v0.6.0.
edawson
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Commits on Nov 6, 2020

[cudamapper] Fix issues from PR review.
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Commits on Nov 10, 2020

[chainerutils] Address review comments.
edawson
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Commits on Nov 20, 2020

Merge branch 'dev-v0.6.0' of https://github.com/clara-parabricks/genomeworks into anchor-backtrace-io
edawson
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