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Moving the Aarhus materials into the Workshops folder.
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| FROM rocker/binder:4.2.0 | ||
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| ## Declares build arguments | ||
| ARG NB_USER | ||
| ARG NB_UID | ||
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| COPY --chown=${NB_USER} . ${HOME} | ||
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| ENV DEBIAN_FRONTEND=noninteractive | ||
| USER root | ||
| RUN echo "Checking for 'apt.txt'..." \ | ||
| ; if test -f "apt.txt" ; then \ | ||
| apt-get update --fix-missing > /dev/null\ | ||
| && xargs -a apt.txt apt-get install --yes \ | ||
| && apt-get clean > /dev/null \ | ||
| && rm -rf /var/lib/apt/lists/* \ | ||
| ; fi | ||
| USER ${NB_USER} | ||
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| ## Run an install.R script, if it exists. | ||
| RUN if [ -f install.R ]; then R --quiet -f install.R; fi |
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| MIT License | ||
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| Copyright (c) 2022 Socorro Dominguez Vidana | ||
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| Permission is hereby granted, free of charge, to any person obtaining a copy | ||
| of this software and associated documentation files (the "Software"), to deal | ||
| in the Software without restriction, including without limitation the rights | ||
| to use, copy, modify, merge, publish, distribute, sublicense, and/or sell | ||
| copies of the Software, and to permit persons to whom the Software is | ||
| furnished to do so, subject to the following conditions: | ||
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| The above copyright notice and this permission notice shall be included in all | ||
| copies or substantial portions of the Software. | ||
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| THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR | ||
| IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, | ||
| FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE | ||
| AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER | ||
| LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, | ||
| OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE | ||
| SOFTWARE. |
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| [](README.md) [](README.es.md) [](README.ru.md) | ||
| [](README.jp.md) | ||
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| [](https://www.tidyverse.org/lifecycle/#experimental) | ||
| [](https://nsf.gov/awardsearch/showAward?AWD_ID=1948926) | ||
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| # Neotoma Current R Workshop | ||
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| Es un repositorio que albergar talleres interactivos de R. Este repositorio siempre estará configurado para el Neotoma Workshop más reciente/actual. Todos los talleras anteriores estarán almacenados en el repositorio[Neotoma Workshops](https://github.com/NeotomaDB/Workshops). | ||
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| Este repositorio está construido de tal forma que permite que se trabaje en línea a través de la estructura necesaria para mostrar el contenido a través de RStudio usando Binder (y Docker). Cuando se haga click en el enlace Binder, RStudio se abrirá en el navegador del usuario. | ||
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| **Actualmente, este repositorio contiene un taller que se llevará acabo en línea: UQAM GEOTOP.** | ||
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| [](https://mybinder.org/v2/gh/NeotomaDB/Current_Workshop/main?urlpath=rstudio) | ||
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| ## Colaboradores | ||
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| Es un proyecto abierto y, la o las contribuciones de cualquier persona son bienvenidas. Todos los colaboradores en este proyecto están sujetos a un código de conducta (CODE_OF_CONDUCT.md). Por favor, revise y siga este código de conducta como parte de su contribución. | ||
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| * [](https://orcid.org/0000-0002-7926-4935) [Socorro Dominguez Vidana](https://sedv8808.github.io/) | ||
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| * [](https://orcid.org/0000-0002-2700-4605) [Simon Goring](http://goring.org) | ||
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| ### Traducciones | ||
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| * Ruso: [Arsenii Galimov](https://ipae.uran.ru/Galimov_AT) | ||
| * Español: [Deborah V. Espinosa-Martínez](https://orcid.org/0000-0002-3848-8094) | ||
| * Japonés: [Socorro Dominguez Vidana](https://ht-data.com/about.html) | ||
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| ## Como usar este repositorio | ||
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| El repositorio contiene dos tipos diferentes de flujos de trabajo en R, un flujo de trabajo complejo que muestra cómo gestionar y modificar cronologías con el paquete en R, y un flujo de trabajo simple que muestra como acceder a los datos y realizar análisis relativamente simple. Estos flujos de trabajo pueden ser modificados para adaptar su contenido (por ejemplo, centrándose en los diferentes conjuntos de datos o contextos geoespaciales). | ||
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| Los usuarios pueden clonar este taller y modificar el contenido, aunque se debe tener en cuenta que los enlaces Binder son específicos para este repositorio, por lo que tienen que ser modificados desde la configuración Binder de cada usuario. | ||
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| * `runtime.txt` se utiliza para definir el ambiente R que se utilizará por Docker/Binder | ||
| * `apt.txt` define un conjunto de paquetes que son requeridos por Binder/Docker para habilitar las herramientas espaciales del paquete 'neotoma2' en R. |
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| [](README.md) [](README.es.md) [](README.ru.md) | ||
| [](README.jp.md) | ||
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| [](https://www.tidyverse.org/lifecycle/#experimental) | ||
| [](https://nsf.gov/awardsearch/showAward?AWD_ID=1948926) | ||
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| # 二オトマのワークショップ | ||
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| 交流的なRワークショップをホストするためのリポジトリです。このリポジトリは最新のワークショップ用にセットアップされています。前のワークショップは[Neotoma Workshops](https://github.com/NeotomaDB/Workshops)のリポジトリにアーカイブされています。 | ||
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| このリポジトリは、BinderとDockerの技術を使って、ブラウザでRStudioを使うことができます。ワークショプのための必要なパッケージもすべて使えます。 [Binder]のリンクをクリックすると、ユーザーのブラウザでRStudioが開きます。 | ||
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| **今、このリポジトリはUQAM GEOTOPのワークショップのコンテンツを上げています。** | ||
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| [](https://mybinder.org/v2/gh/NeotomaDB/Current_Workshop/main?urlpath=rstudio) | ||
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| ## 貢献者 | ||
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| これはオープンなプロジェクトであり、どの人からの貢献も歓迎しています。 プロジェクトに参加するために、貢献者は[行動規範](CODE_OF_CONDUCT.md)を確認して従ってください。 | ||
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| * [](https://orcid.org/0000-0002-7926-4935) [Socorro Dominguez Vidana](https://sedv8808.github.io/) | ||
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| * [](https://orcid.org/0000-0002-2700-4605) [Simon Goring](http://goring.org) | ||
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| ### 翻訳 | ||
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| * ロシア語 ー [Arsenii Galimov](https://ipae.uran.ru/Galimov_AT) | ||
| * スペイン語 ー [Deborah V. Espinosa-Martínez](https://orcid.org/0000-0002-3848-8094) | ||
| * 日本語 ー [Socorro Dominguez Vidana](https://ht-data.com/about.html) | ||
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| ## リポジトリの使い方 | ||
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| このリポジトリには 2 つのR ワークフローをが含まれています。 | ||
| Simple Workflowとはニオトマ２パッケージを使って、簡単な分析を行う方法を示すワークフローです。 | ||
| Complex Workflowとはパッケージを使用して暦を管理および変更する方法を示すワークフローです。 | ||
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| ワークフローはコンテンツに合わせて変更ができます。 (例：さまざまなデータセット類や違う地理空間情報に焦点を当てる) | ||
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| ユーザーはこのワークショップを複製してコンテンツを変更することができますが、Binderリンクはこのリポジトリに固有であり、ユーザーは自分の Binder セットアップをする必要があります。 | ||
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| * `runtime.txt` は、Docker/BinderのR環境を定義するために使っています。 | ||
| * `apt.txt` は空間情報を使うためのパッケージをロードします。 |
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| [](README.md) [](README.es.md) [](README.ru.md) | ||
| [](README.jp.md) | ||
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| [](https://www.tidyverse.org/lifecycle/#experimental) | ||
| [](https://nsf.gov/awardsearch/showAward?AWD_ID=1948926) | ||
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| # Neotoma Current R Workshop | ||
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| A repository to host interactive R workshops. This repository will always be set up for the most recent/current Neotoma Workshop. All past workshops will be archived in the [Neotoma Workshops](https://github.com/NeotomaDB/Workshops) repository. | ||
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| This repository is built with the structure required to serve the content through an interactive, online RStudio session using Binder (and Docker). Clicking the Binder link will open RStudio in the user's browser. | ||
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| **Currently, this repo hosts the Workshop to be delivered in Aarhus about Species Distribution Modelling with pollen data.** | ||
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| To access the content for this Workshop, click the badge below: | ||
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| [](https://mybinder.org/v2/gh/NeotomaDB/Current_Workshop/main?urlpath=rstudio) | ||
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| ## Contributors | ||
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| This is an open project and contributions are welcome from any individual. All contributors to this project are bound by a [code of conduct](CODE_OF_CONDUCT.md). Please review and follow this code of conduct as part of your contribution. | ||
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| * [](https://orcid.org/0000-0002-7926-4935) [Socorro Dominguez Vidana](https://sedv8808.github.io/) | ||
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| * [](https://orcid.org/0000-0002-2700-4605) [Simon Goring](http://goring.org) | ||
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| * [](https://orcid.org/0000-0002-3693-5946) [Nora Schlenker](https://geography.wisc.edu/staff/schlenker-nora/) | ||
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| ### Translations | ||
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| * Russian: [Arsenii Galimov](https://ipae.uran.ru/Galimov_AT) | ||
| * Spanish: [Deborah V. Espinosa-Martínez](https://orcid.org/0000-0002-3848-8094) | ||
| * Japanese: [Socorro Dominguez Vidana](https://ht-data.com/about.html) | ||
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| ## How to use this repository | ||
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| This repository contains two different R workflows, a complex workflow that shows how to manage and modify chronologies with the R package, and a simple workflow that shows how to access data and perform relatively simple analysis. These workflows may be modified for content (e.g., focusing on different dataset types or geospatial contexts). | ||
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| Users may clone this workshop and modify the content, but be aware that the Binder links are specific to this repository, and must be modified through the users' own Binder setup. | ||
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| * `apt.txt` defines a set of packages required by Binder/Docker to enable the spatial tools in the `neotoma2` R package. | ||
| * `install.R` defines the R packages that are to be loaded by the Binder environment at runtime. |
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| [](README.md) [](README.es.md) [](README.ru.md) | ||
| [](README.jp.md) | ||
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| [](https://www.tidyverse.org/lifecycle/#experimental) | ||
| [](https://nsf.gov/awardsearch/showAward?AWD_ID=1948926) | ||
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| # Neotoma Current R Workshop | ||
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| Репозиторий для проведения интерактивных семинаров по R. Этот репозиторий всегда будет содержать самую последнюю/текущую Neotoma Workshop. Все прошедшие семинары будут храниться в архивном репозитории [Neotoma Workshops](https://github.com/NeotomaDB/Workshops). | ||
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| Этот репозиторий построен таким образом, что позволяет работать в онлайн режиме через RStudio с использованием Binder (и Docker). Щелкнув ссылку Binder, вы откроете RStudio в браузере пользователя. | ||
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| **В данный момент, в этом репозитории хранится семинар, который будет проведен онлайн и называется: UQAM GEOTOP workshop** | ||
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| [](https://mybinder.org/v2/gh/NeotomaDB/Current_Workshop/main?urlpath=rstudio) | ||
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| ## Авторы | ||
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| Это открытый проект и приветствуется вклад всех желающих. Участники проекта связаны [Правилами поведения](CODE_OF_CONDUCT.md). Пожалуйста, ознакомитесь с правилами и следуйте им, это является обязательным условием для участников проекта. | ||
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| * [](https://orcid.org/0000-0002-7926-4935) [Socorro Dominguez Vidana](https://sedv8808.github.io/) | ||
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| * [](https://orcid.org/0000-0002-2700-4605) [Simon Goring](http://goring.org) | ||
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| * перевод: [Arsenii Galimov](https://ipae.uran.ru/Galimov_AT) | ||
| * испанский: [Deborah V. Espinosa-Martínez](https://orcid.org/0000-0002-3848-8094) | ||
| * Японский: [Socorro Dominguez Vidana](https://ht-data.com/about.html) | ||
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| ## Как использовать репозиторий | ||
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| В репозитории содержится два разных R workflow (фиксированный пошаговый процесс обработки данных и отчетности): **сложный рабочий процесс** показывает как управлять хронологиями (*наборы данных Neotoma*) и изменять их с помощью пакета R, и **простой рабочий процесс**, который показывает как получить доступ к данным и выполнить относительно простой анализ. Эти рабочие процессы могут быть изменены под ваши задачи (например, сделать акцент на разные типы наборов данных или геопространственные данные). | ||
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| Пользователи могут клонировать это рабочее пространство и модифицировать содержимое, но важно помнить, что ссылки Binder связаны именно с этим репозиторием и должны быть измененны посредством собственного Binder. | ||
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| * `runtime.txt` Используется для определения среды R, которая будет использоваться Docker/Binder | ||
| * `apt.txt` Используется для определения набора пакетов необходимых для работы Binder/Docker с досутпом к пространственным данным из пакета R `neotoma2`. |
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| vim |
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