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Changes for NML v2.3 release #61

Merged
merged 54 commits into from
Sep 20, 2023
Merged

Changes for NML v2.3 release #61

merged 54 commits into from
Sep 20, 2023

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pgleeson
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pgleeson and others added 30 commits January 24, 2023 18:02
@pgleeson
Better handling of spikes in nest 3.3
d3d4f55
@pgleeson
Update tolerances for nest; test on pynn 0.10.1
15e4a9f
@pgleeson
Use nrn 8.1
fadb8f4
@sanjayankur31
feat(setup.py): update to supported python releases
cce00e9
@sanjayankur31
ci(py): add 3.10, 3.11 to matrix
cdabbd2
@sanjayankur31
feat!(setup.py): drop py27 support
8688047 
BREAKING CHANGE: drop py27 support
@sanjayankur31
feat: update for pyneuroml API change
42a3e0e 
References:

NeuroML/pyNeuroML@4b202c2
NeuroML/pyNeuroML@fbc0ef5
@pgleeson
Merge branch 'master' into experimental
32c1a97 
* master:
Merge branch 'master' into experimental
36e17e3
@pgleeson
Improved nml->mdf export
01e074e
@pgleeson
Use master branch of OMV
7d899e4
@pgleeson
Test NEURON==8.2.2
3275f8b
@pgleeson
Tests with latest modelspec
423b9b0
@pgleeson
Save yaml file
a02056c
@pgleeson
Improve region handling
6a0324f
@pgleeson
Don;t test on pynnneuron
32a55d9
@pgleeson
Update NMLliteUI to use PyQt6
20152de
@pgleeson
Remove net.to_yaml_file(), which is not in released modelspec yet...
d0c4733
@pgleeson
Merge branch 'feat/get-hex-color' into experimental
b14ae69
@pgleeson
Removing req of pyneuroml, since pynml requires nmllite...
bacb8be
@pgleeson
Merge pull request #53 from NeuroML/experimental
9f0730a 
Tested with latest pynn/nrn versions; updates to nml->mdf export
@pgleeson
To NMLlite v0.5.4
81bd422
@pgleeson
Fix trace select issue
e20caaf
@pgleeson
Merge pull request #54 from NeuroML/experimental
127bd0f 
To NMLlite v0.5.4
@pgleeson
Fix for warning dialog in gui
3194e2f
@pgleeson
Merge branch 'experimental' into development
11cc3b3 
* experimental:
  Fix for warning dialog in gui
@pgleeson
Adding pypi auto release for GHA
8e436e2
@pgleeson
To v0.5.5
dcf0c2f
@pgleeson
Formatted with black
722eb32
@pgleeson
Updates to mdf handler
c18abed
@pgleeson
Merge pull request #55 from NeuroML/experimental
689997e 
To v0.5.5; black formatting; updates to mdf export
@pgleeson
Improvements to mdf generation
63d9c21
@pgleeson
Improved mdf export
623b7bd
@pgleeson
Better handling of weights in mdf
666025f
@pgleeson
Allow random weights on inputs
c692c5f
@pgleeson
Updates for arbor v0.8.1
82aa0c2
@pgleeson
Improved mdf mapping of networks
b7669e1
@pgleeson
Update to v0.5.6
94bf49a
@pgleeson
Merge pull request #56 from NeuroML/experimental
828747f 
Updates to MDF mapping & uses latest Arbor
@pgleeson
Code formatting
63f01d1
@pgleeson
Add py3.8 test
262203f
@pgleeson
Test on 3.10 not 3.7 (nest 3.3 failing)
9c5dac9
@pgleeson
Merge pull request #57 from NeuroML/experimental
4a176b6 
Formatting
@pgleeson
Merge branch 'experimental' into feat/py311
76626d9
@pgleeson
Merge pull request #50 from sanjayankur31/feat/py311
e234ab3 
Feat/py311
@pgleeson
Use pip install for pynml
62a83ca
@pgleeson
Merge pull request #58 from NeuroML/experimental
77cd6f4 
test on 3.11
@pgleeson
Adding option to use string for percentage of inputs, e.g. containing…
277200c 
… parameter(s)

Regenerated with latest modelspec
@pgleeson
Merge pull request #59 from NeuroML/experimental
5c9eb7c 
Adding option to use string for percentage of inputs, e.g. containing…
@pgleeson
Merge branch 'development' into experimental
5784c75
@pgleeson
Update to v0.5.7
477b419
@pgleeson
Test validity of more nml files
c87a2a4
@pgleeson
Updates to MDF handler
d192a5a
@pgleeson
Merge pull request #60 from NeuroML/experimental
ac205ae 
Update to v0.5.7
@pgleeson pgleeson merged commit 7ca95b5 into master Sep 20, 2023
13 checks passed
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2 participants
@pgleeson @sanjayankur31