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python312Packages.snakemake-interface-executor-plugins: 9.3.2 -> 9.3.3 #371317

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@r-ryantm r-ryantm commented Jan 6, 2025

Automatic update generated by nixpkgs-update tools. This update was made based on information from passthru.updateScript.

meta.description for python312Packages.snakemake-interface-executor-plugins is: This package provides a stable interface for interactions between Snakemake and its executor plugins

meta.homepage for python312Packages.snakemake-interface-executor-plugins is: https://github.com/snakemake/snakemake-interface-executor-plugins

meta.changelog for python312Packages.snakemake-interface-executor-plugins is: https://github.com/snakemake/snakemake-interface-executor-plugins/blob/refs/tags/v9.3.3/CHANGELOG.md

Updates performed
  • Ran passthru.UpdateScript
To inspect upstream changes
Impact

Checks done


  • built on NixOS
  • The tests defined in passthru.tests, if any, passed
  • found 9.3.3 with grep in /nix/store/5l8qjyyhqv29jzkiqimdg6rb7nr0247v-python3.12-snakemake-interface-executor-plugins-9.3.3
  • found 9.3.3 in filename of file in /nix/store/5l8qjyyhqv29jzkiqimdg6rb7nr0247v-python3.12-snakemake-interface-executor-plugins-9.3.3

Rebuild report (if merged into master) (click to expand)
12 total rebuild path(s)

12 package rebuild(s)

First fifty rebuilds by attrpath

python312Packages.snakemake
python312Packages.snakemake-executor-plugin-cluster-generic
python312Packages.snakemake-interface-executor-plugins
python312Packages.snakemake-storage-plugin-s3
python312Packages.snakemake-storage-plugin-xrootd
python313Packages.snakemake
python313Packages.snakemake-executor-plugin-cluster-generic
python313Packages.snakemake-interface-executor-plugins
python313Packages.snakemake-storage-plugin-s3
python313Packages.snakemake-storage-plugin-xrootd
snakemake
Instructions to test this update (click to expand)

Either download from the cache:

nix-store -r /nix/store/5l8qjyyhqv29jzkiqimdg6rb7nr0247v-python3.12-snakemake-interface-executor-plugins-9.3.3 \
  --option binary-caches 'https://cache.nixos.org/ https://nixpkgs-update-cache.nix-community.org/' \
  --option trusted-public-keys '
  nixpkgs-update-cache.nix-community.org-1:U8d6wiQecHUPJFSqHN9GSSmNkmdiFW7GW7WNAnHW0SM=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(The nixpkgs-update cache is only trusted for this store-path realization.)
For the cached download to work, your user must be in the trusted-users list or you can use sudo since root is effectively trusted.

Or, build yourself:

nix-build -A python312Packages.snakemake-interface-executor-plugins https://github.com/r-ryantm/nixpkgs/archive/85e37c8a4c026b7d447876a8320c0f298ba9eb4c.tar.gz

Or:

nix build github:r-ryantm/nixpkgs/85e37c8a4c026b7d447876a8320c0f298ba9eb4c#python312Packages.snakemake-interface-executor-plugins

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/5l8qjyyhqv29jzkiqimdg6rb7nr0247v-python3.12-snakemake-interface-executor-plugins-9.3.3
ls -la /nix/store/5l8qjyyhqv29jzkiqimdg6rb7nr0247v-python3.12-snakemake-interface-executor-plugins-9.3.3/bin


Pre-merge build results

We have automatically built all packages that will get rebuilt due to
this change.

This gives evidence on whether the upgrade will break dependent packages.
Note sometimes packages show up as failed to build independent of the
change, simply because they are already broken on the target branch.

nixpkgs-review result

Generated using nixpkgs-review.

Command: nixpkgs-review


x86_64-linux

❌ 16 packages failed to build:
  • snakemake (python312Packages.snakemake)
  • python312Packages.snakemake-storage-plugin-s3
  • python312Packages.snakemake-storage-plugin-s3.dist
  • python312Packages.snakemake-storage-plugin-xrootd
  • python312Packages.snakemake-storage-plugin-xrootd.dist
  • snakemake.dist (python312Packages.snakemake.dist)
  • python313Packages.snakemake
  • python313Packages.snakemake-executor-plugin-cluster-generic
  • python313Packages.snakemake-executor-plugin-cluster-generic.dist
  • python313Packages.snakemake-interface-executor-plugins
  • python313Packages.snakemake-interface-executor-plugins.dist
  • python313Packages.snakemake-storage-plugin-s3
  • python313Packages.snakemake-storage-plugin-s3.dist
  • python313Packages.snakemake-storage-plugin-xrootd
  • python313Packages.snakemake-storage-plugin-xrootd.dist
  • python313Packages.snakemake.dist
✅ 4 packages built:
  • python312Packages.snakemake-executor-plugin-cluster-generic
  • python312Packages.snakemake-executor-plugin-cluster-generic.dist
  • python312Packages.snakemake-interface-executor-plugins
  • python312Packages.snakemake-interface-executor-plugins.dist

Maintainer pings

cc @veprbl for testing.

Tip

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@natsukium
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nixpkgs-review result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 371317


x86_64-linux

❌ 8 packages failed to build:
  • snakemake (python312Packages.snakemake)
  • python312Packages.snakemake-storage-plugin-s3
  • python312Packages.snakemake-storage-plugin-xrootd
  • python313Packages.snakemake
  • python313Packages.snakemake-executor-plugin-cluster-generic
  • python313Packages.snakemake-interface-executor-plugins
  • python313Packages.snakemake-storage-plugin-s3
  • python313Packages.snakemake-storage-plugin-xrootd
✅ 2 packages built:
  • python312Packages.snakemake-executor-plugin-cluster-generic
  • python312Packages.snakemake-interface-executor-plugins

aarch64-linux

❌ 8 packages failed to build:
  • snakemake (python312Packages.snakemake)
  • python312Packages.snakemake-storage-plugin-s3
  • python312Packages.snakemake-storage-plugin-xrootd
  • python313Packages.snakemake
  • python313Packages.snakemake-executor-plugin-cluster-generic
  • python313Packages.snakemake-interface-executor-plugins
  • python313Packages.snakemake-storage-plugin-s3
  • python313Packages.snakemake-storage-plugin-xrootd
✅ 2 packages built:
  • python312Packages.snakemake-executor-plugin-cluster-generic
  • python312Packages.snakemake-interface-executor-plugins

x86_64-darwin

❌ 10 packages failed to build:
  • snakemake (python312Packages.snakemake)
  • python312Packages.snakemake-executor-plugin-cluster-generic
  • python312Packages.snakemake-interface-executor-plugins
  • python312Packages.snakemake-storage-plugin-s3
  • python312Packages.snakemake-storage-plugin-xrootd
  • python313Packages.snakemake
  • python313Packages.snakemake-executor-plugin-cluster-generic
  • python313Packages.snakemake-interface-executor-plugins
  • python313Packages.snakemake-storage-plugin-s3
  • python313Packages.snakemake-storage-plugin-xrootd

aarch64-darwin

⏩ 2 packages marked as broken and skipped:
  • python312Packages.snakemake-storage-plugin-xrootd
  • python313Packages.snakemake-storage-plugin-xrootd
❌ 8 packages failed to build:
  • snakemake (python312Packages.snakemake)
  • python312Packages.snakemake-executor-plugin-cluster-generic
  • python312Packages.snakemake-interface-executor-plugins
  • python312Packages.snakemake-storage-plugin-s3
  • python313Packages.snakemake
  • python313Packages.snakemake-executor-plugin-cluster-generic
  • python313Packages.snakemake-interface-executor-plugins
  • python313Packages.snakemake-storage-plugin-s3

@veprbl
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veprbl commented Jan 12, 2025

Fix for datrie in #373250

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