--- re-building 'peakCombiner.Rmd' using rmarkdown

processing vignette 'peakCombiner.Rmd' failed with diagnostics:

Vignette re-building failed.

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Process completed with exit code 1.

Input required and not supplied: path

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/windows/contrib/4.5: