Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Issue 740 #773

Open
wants to merge 29 commits into
base: main
Choose a base branch
from
Open
Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
29 commits
Select commit Hold shift + click to select a range
2d4b8e8
standardizing column name case
fdefalco Jul 20, 2023
0d486d1
case standardization
fdefalco Sep 5, 2023
ae15edd
Better performance of export for ARES
Aug 25, 2023
5a33d22
Fix DEVICES_BY_TYPE being always empty (#738)
Aug 29, 2023
7ba3926
Improve performance of temporal characterization
Aug 30, 2023
dec19dc
Fix failure on export of empty reports
Oct 9, 2023
5fdd05c
Merge pull request #737 from ganisimov/export-performance
fdefalco Oct 9, 2023
734803f
feat: added support for duckdb in exportToAres
Mikhail-iontsev Oct 20, 2023
9830795
feat: added support for duckdb in exportToAres
Mikhail-iontsev Nov 9, 2023
3d5fd6d
Fix fromJSON correct method usage
Nov 17, 2023
d585876
fix to documentation and function detaults
fdefalco Dec 20, 2023
41dbcc4
Add links to DESCRIPTION
olivroy Feb 7, 2024
6496ac7
fix: error creating the metadata table in case provided with 0 length…
Mikhail-iontsev Mar 4, 2024
2355cc2
Trim trailing whitespaces in exportToAres.R
Mar 15, 2024
10349d4
Improve performance of exportToAres in DuckDB format
Mar 18, 2024
bf47864
Fix R check warnings/notes
Mar 21, 2024
686f61f
Merge pull request #754 from ganisimov/duckdb_export_performance
fdefalco Mar 21, 2024
cd0c03a
Improve performance of analysis 117
Mar 26, 2024
c7cd126
Handle missing server value in getTemporalData
Apr 2, 2024
246ce53
Move repeated subquery to temp table in analysis 1815
Apr 10, 2024
9e5c4df
Merge pull request #760 from ganisimov/fix_temporal_characterization
fdefalco May 14, 2024
56cebe5
Merge pull request #742 from OHDSI/duckdb_support_exportToAres
fdefalco May 20, 2024
de6aa90
Merge pull request #761 from ganisimov/analysis_1815
fdefalco May 20, 2024
f9405e4
Merge pull request #756 from ganisimov/analysis_117
fdefalco May 20, 2024
c0f1a93
Merge pull request #748 from olivroy/patch-1
fdefalco May 20, 2024
b6ff655
Merge pull request #743 from uz-leuven/issue-726
fdefalco May 20, 2024
d2e0bfd
added location table export script
Mikhail-iontsev Jun 28, 2024
d519971
Merge pull request #765 from OHDSI/location_export
fdefalco Jul 18, 2024
e3dd26f
rename subject_id
1Anuar Sep 16, 2024
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions .Rbuildignore
Original file line number Diff line number Diff line change
Expand Up @@ -8,3 +8,4 @@ deploy.sh
_pkgdown.yml
^CRAN-SUBMISSION$
^cran-comments\.md$
^.lintr
3 changes: 3 additions & 0 deletions .lintr
Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
linters: linters_with_defaults(
object_name_linter = object_name_linter(styles = c("camelCase", "snake_case", "symbols")))
encoding: "UTF-8"
22 changes: 13 additions & 9 deletions DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ Title: Achilles Data Source Characterization
Version: 1.7.2
Date: 2023-05-11
Authors@R: c(
person("Frank", "DeFalco", email = "[email protected]", role = c("aut","cre")),
person("Patrick", "Ryan", email = "[email protected]", role = c("aut")),
person("Frank", "DeFalco", email = "[email protected]", role = c("aut","cre")),
person("Patrick", "Ryan", email = "[email protected]", role = c("aut")),
person("Martijn", "Schuemie", email = "[email protected]", role = c("aut")),
person("Vojtech", "Huser", role = c("aut")),
person("Chris", "Knoll", role = c("aut")),
Expand All @@ -16,17 +16,19 @@ Authors@R: c(
)
Maintainer: Frank DeFalco <[email protected]>
LazyData: true
Description: Automated Characterization of Health Information at Large-Scale
Longitudinal Evidence Systems. Creates a descriptive statistics summary for
an Observational Medical Outcomes Partnership Common Data Model standardized
data source. This package includes functions for executing summary queries on
the specified data source and exporting reporting content for use across a
variety of Observational Health Data Sciences and Informatics community
applications.
Description: Automated Characterization of Health Information at Large-Scale
Longitudinal Evidence Systems. Creates a descriptive statistics summary for
an Observational Medical Outcomes Partnership Common Data Model standardized
data source. This package includes functions for executing summary queries on
the specified data source and exporting reporting content for use across a
variety of Observational Health Data Sciences and Informatics community
applications.
Depends:
DatabaseConnector (>= 2.0.0),
R (>= 4.0.0)
Imports:
DBI,
duckdb,
SqlRender (>= 1.6.0),
dplyr,
jsonlite,
Expand All @@ -49,4 +51,6 @@ License: Apache License
Roxygen: list()
RoxygenNote: 7.2.3
Encoding: UTF-8
URL: https://ohdsi.github.io/Achilles/, https://github.com/OHDSI/Achilles
BugReports: https://github.com/OHDSI/Achilles/issues
Config/testthat/edition: 3
1 change: 1 addition & 0 deletions NAMESPACE
Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,7 @@ export(runMissingAnalyses)
export(showReportTypes)
export(sumAcrossYears)
export(tsCompleteYears)
import(DBI)
import(DatabaseConnector)
import(ParallelLogger)
import(SqlRender)
Expand Down
Loading
Loading