--- re-building ‘a01_Introduction.Rmd’ using rmarkdown

processing vignette 'a01_Introduction.Rmd' failed with diagnostics:

processing vignette 'a02_Generate_a_sequence_cohort.Rmd' failed with diagnostics:

processing vignette 'a03_Summarise_sequence_ratios.Rmd' failed with diagnostics:

processing vignette 'a04_Visualise_sequence_ratios.Rmd' failed with diagnostics:

processing vignette 'a05_Summarise_temporal_symmetry.Rmd' failed with diagnostics:

processing vignette 'a06_Visualise_temporal_symmetry.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

--- re-building ‘a01_Introduction.Rmd’ using rmarkdown

processing vignette 'a01_Introduction.Rmd' failed with diagnostics:

processing vignette 'a02_Generate_a_sequence_cohort.Rmd' failed with diagnostics:

processing vignette 'a03_Summarise_sequence_ratios.Rmd' failed with diagnostics:

processing vignette 'a04_Visualise_sequence_ratios.Rmd' failed with diagnostics:

processing vignette 'a05_Summarise_temporal_symmetry.Rmd' failed with diagnostics:

processing vignette 'a06_Visualise_temporal_symmetry.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

--- re-building ‘a01_Introduction.Rmd’ using rmarkdown

processing vignette 'a01_Introduction.Rmd' failed with diagnostics:

processing vignette 'a02_Generate_a_sequence_cohort.Rmd' failed with diagnostics:

processing vignette 'a03_Summarise_sequence_ratios.Rmd' failed with diagnostics:

processing vignette 'a04_Visualise_sequence_ratios.Rmd' failed with diagnostics:

processing vignette 'a05_Summarise_temporal_symmetry.Rmd' failed with diagnostics:

processing vignette 'a06_Visualise_temporal_symmetry.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

--- re-building ‘a01_Introduction.Rmd’ using rmarkdown

processing vignette 'a01_Introduction.Rmd' failed with diagnostics:

processing vignette 'a02_Generate_a_sequence_cohort.Rmd' failed with diagnostics:

processing vignette 'a03_Summarise_sequence_ratios.Rmd' failed with diagnostics:

processing vignette 'a04_Visualise_sequence_ratios.Rmd' failed with diagnostics:

processing vignette 'a05_Summarise_temporal_symmetry.Rmd' failed with diagnostics:

processing vignette 'a06_Visualise_temporal_symmetry.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

--- re-building 'a01_Introduction.Rmd' using rmarkdown

processing vignette 'a01_Introduction.Rmd' failed with diagnostics:

processing vignette 'a02_Generate_a_sequence_cohort.Rmd' failed with diagnostics:

processing vignette 'a03_Summarise_sequence_ratios.Rmd' failed with diagnostics:

processing vignette 'a04_Visualise_sequence_ratios.Rmd' failed with diagnostics:

processing vignette 'a05_Summarise_temporal_symmetry.Rmd' failed with diagnostics:

processing vignette 'a06_Visualise_temporal_symmetry.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.

Connection is garbage-collected, use dbDisconnect() to avoid this.

Connection is garbage-collected, use dbDisconnect() to avoid this.

Connection is garbage-collected, use dbDisconnect() to avoid this.

Connection is garbage-collected, use dbDisconnect() to avoid this.

No files were found with the provided path: /Users/runner/work/CohortSymmetry/CohortSymmetry/check. No artifacts will be uploaded.

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.

Connection is garbage-collected, use dbDisconnect() to avoid this.

Connection is garbage-collected, use dbDisconnect() to avoid this.

Connection is garbage-collected, use dbDisconnect() to avoid this.

Connection is garbage-collected, use dbDisconnect() to avoid this.

No files were found with the provided path: /home/runner/work/CohortSymmetry/CohortSymmetry/check. No artifacts will be uploaded.

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.

Connection is garbage-collected, use dbDisconnect() to avoid this.

Connection is garbage-collected, use dbDisconnect() to avoid this.

Connection is garbage-collected, use dbDisconnect() to avoid this.

Connection is garbage-collected, use dbDisconnect() to avoid this.

No files were found with the provided path: /home/runner/work/CohortSymmetry/CohortSymmetry/check. No artifacts will be uploaded.

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.

Connection is garbage-collected, use dbDisconnect() to avoid this.

Connection is garbage-collected, use dbDisconnect() to avoid this.

Connection is garbage-collected, use dbDisconnect() to avoid this.

No files were found with the provided path: /home/runner/work/CohortSymmetry/CohortSymmetry/check. No artifacts will be uploaded.

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.

Connection is garbage-collected, use dbDisconnect() to avoid this.

Connection is garbage-collected, use dbDisconnect() to avoid this.

Connection is garbage-collected, use dbDisconnect() to avoid this.

Connection is garbage-collected, use dbDisconnect() to avoid this.

No files were found with the provided path: D:/a/CohortSymmetry/CohortSymmetry/check. No artifacts will be uploaded.