587 remove frozen

[jwestw]

Pull Request submission

Removes the word frozen from the pipeline in both paths and in dictionary and Toml keys.

Closes or fixes

• Detail the ticket(s) you are closing with this PR
  RDRP-587

Code

• Code runs The code runs on my machine and/or CDSW
• Conflicts resolved There are no conflicts (I have performed a rebase if necessary)
• Requirements My/our code functions according to the requirements of the ticket
• Dependencies I have updated the environment yaml so it includes any new libraries I have used
• Configuration file updated any high level parameters that the user may interact with have been put into the config file (and imported to the script)
• Clean Code
  • Code is as PEP 8 compliant as I can humanly make it
  • Code passess flake8 linting check
  • Code adheres to DRY
• Type hints All new functions have type hints

Documentation

Any new code includes all the following forms of documentation:

• Function Documentation Docstrings within the function(s')/methods have been created
  • Includes Args and returns for all major functions
  • The docstring details data types
• Updated Documentation: User and/or developer working doc has been updated

Data

• All data needed to run this script is available in Dev/Test
• All data is excluded from this pull request
• Secrets checker pre-commit passes

Testing

• Unit tests Unit tests have been created and are passing or a new ticket to create tests has been created

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Peer Review Section

• All requirements install from (updated) environment.yaml
• Documentation has been created and is clear - check the working document
• Doctrings (Google format) have been created and accurately describe the function's functionality
• Unit tests pass, or if not present a new ticket to create tests has been created
• Code runs The code runs on reviewer's machine and/or CDSW

Final approval (post-review)

The author has responded to my review and made changes to my satisfaction.

• I recommend merging this request.

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Review comments

Insert detailed comments here!

These might include, but not exclusively:

• bugs that need fixing (does it work as expected? and does it work with other code
  that it is likely to interact with?)
• alternative methods (could it be written more efficiently or with more clarity?)
• documentation improvements (does the documentation reflect how the code actually works?)
• additional tests that should be implemented (do the tests effectively assure that it
  works correctly?)
• code style improvements (could the code be written more clearly?)
• Do the changes represent a change in functionality so the version number should increase? Start a discussion if so.
• As a review you can generates the same outputs from running the code

Your suggestions should be tailored to the code that you are reviewing.
Be critical and clear, but not mean. Ask questions and set actions.

[github-actions]

Detailed Coverage Report

File	Stmts	Miss	Cover	Missing
src
__init__.py	0	0	100%
src/aggregation
__init__.py	0	0	100%
src/construction
__init__.py	0	0	100%
construction.py	85	85	0%	2–4, 6–8, 10, 13, 40–43, 45–47, 50–52, 55–64, 67, 69, 72, 75, 78–79, 82–84, 87, 91–92, 97–98, 102–103, 105, 108, 110, 113, 116–117, 120, 128, 136–137, 139, 144, 146–147, 152, 155, 160–162, 165, 168, 170, 174, 176, 179, 184, 189, 196–198, 201–202, 206, 209–213, 216, 218, 220
old_construction.py	113	113	0%	3–7, 10, 13, 41–45, 48–50, 53–55, 60, 63, 65, 68, 74–75, 88–89, 92, 101, 103–104, 107, 117, 120, 124, 132, 135–136, 138, 140–141, 144, 149, 156, 164, 167, 171–174, 176–177, 180, 183–187, 192, 199–202, 204, 207, 210–213, 216–217, 220–222, 224–229, 233–239, 244–245, 248–249, 252, 254–255, 257, 259, 263–264, 267, 270, 275, 278–280, 282, 286, 289, 292, 295–297, 301, 304, 306
src/estimation
__init__.py	0	0	100%
apply_weights.py	16	16	0%	2–5, 7, 10, 24–29, 32–34, 36
calculate_weights.py	37	37	0%	1–3, 6, 9, 23–25, 28, 30, 33, 64–66, 69, 72, 75–78, 80–81, 85, 96, 99, 102, 105, 108, 111, 114–115, 121–122, 124, 127, 139–140
cellno_mapper.py	7	0	100%
src/imputation
MoR.py	112	112	0%	2–5, 7–9, 16–17, 20, 38, 41, 43–44, 46, 50, 52–53, 55, 58, 67–70, 73, 77–78, 80–82, 84, 86, 89, 91, 94, 119, 123, 126–129, 131, 134, 137, 142–144, 147, 150–151, 154–155, 159, 161, 164, 170–172, 175, 184, 188, 194, 201, 211–213, 217, 220, 229–230, 233, 241, 244, 246–248, 250, 254, 262, 264, 266, 268, 270–271, 277, 279–281, 283–284, 288–289, 294–295, 298, 309, 315, 318, 321, 323–324, 326, 329, 332–334, 336, 339, 341, 345, 348–349
__init__.py	0	0	100%
apportionment.py	36	10	72%	124, 126, 141, 143, 145, 157–159, 162, 164
expansion_imputation.py	39	32	17%	21, 25–26, 28–29, 32, 35, 38–40, 44, 47, 49, 52–53, 55, 58, 61, 81–83, 87, 90, 93, 96, 102, 107, 110, 112, 118, 121, 125
imputation_helpers.py	101	49	51%	23–25, 27–28, 30, 32, 37, 50–53, 56–57, 59–60, 62–63, 65–66, 68–69, 71–72, 74–75, 77, 84–85, 87, 256, 258, 260–261, 263, 267, 273, 276, 280, 283–284, 286, 312, 315, 318, 327–328, 330, 332
impute_civ_def.py	94	48	48%	134–136, 166, 168–169, 172–173, 176–178, 183–184, 186, 189, 191–194, 196, 198, 203–204, 206, 209, 211–213, 216, 218–219, 221–222, 224–225, 238, 241–245, 247–248, 251–252, 254–255, 257
manual_imputation.py	19	19	0%	1–2, 4, 6, 9–10, 28–29, 33, 35, 37, 44, 59, 61–62, 64–65, 67–68
pg_conversion.py	36	9	75%	51, 54, 57, 121, 124, 127, 156, 159, 161
sf_expansion.py	72	72	0%	2–4, 6–7, 9, 11–12, 15, 24, 26, 29, 32–33, 36–37, 40, 43–44, 47, 49, 56–57, 61, 64, 69–70, 73, 75, 78–79, 81, 83, 86, 90, 92, 96, 104, 107, 111, 113–114, 116, 118, 121, 124, 133, 136, 139, 148, 151, 153, 159, 165, 168, 177, 180, 185–186, 188, 191–192, 196–197, 200, 204, 208, 211, 219, 221, 225, 227
short_to_long.py	21	21	0%	1, 3–4, 7, 20, 23, 25, 32–33, 35, 37–38, 40–41, 43–45, 47, 49, 53, 55
tmi_imputation.py	178	141	20%	92, 94, 100–102, 105, 112, 115, 117, 122, 127, 132, 145, 148–149, 151, 154–155, 176–178, 180, 182, 185, 188–190, 192–193, 196, 199, 206–209, 211, 235, 238, 240, 243, 247, 251, 272–273, 276, 279–280, 283, 286–287, 289–290, 292, 294, 297, 299, 301, 304, 307–308, 310, 312–314, 316, 323, 325, 332, 334–335, 337–338, 341, 343, 345, 347, 350, 353–354, 357, 359, 361, 366, 372, 378, 384, 388, 407–408, 410, 412–413, 415–416, 418–419, 422, 424–425, 428, 431, 433–434, 450, 452, 455–457, 459, 461, 463–464, 467, 469–470, 473, 475, 477–478, 496, 500, 503–504, 507–508, 511, 514, 516, 519, 521, 526, 528, 535–536, 539, 542–543, 545, 548, 550–551
src/northern_ireland
__init__.py	0	0	100%
ni_headcount_fte.py	29	29	0%	2–4, 6, 8, 11, 25, 27, 29, 31, 33, 35, 37, 40, 55, 57–59, 61, 63–64, 66–67, 69, 72, 81, 83–84, 86
ni_staging.py	36	36	0%	3–6, 8, 10, 13, 21–22, 25, 27–29, 31, 34, 40, 44, 46, 49, 80–81, 84, 89, 93, 96, 99–107, 109, 111
src/outlier_detection
__init__.py	0	0	100%
auto_outliers.py	83	0	100%
manual_outliers.py	16	0	100%
src/outputs
__init__.py	0	0	100%
export_files.py	101	101	0%	5–11, 13–14, 18, 24, 42, 44, 51, 56, 63, 68, 71, 98, 104, 107, 114, 116, 119, 124–125, 128–132, 135–136, 139, 151–153, 155, 158, 169, 171–172, 174, 177, 195, 198, 201–202, 209, 213–214, 217–219, 222, 224, 226–235, 239, 241–250, 255–256, 258, 261–263, 266, 269, 272, 286, 289–290, 298, 301, 303, 305, 315, 317–319, 328, 330, 333–334
form_output_prep.py	23	23	0%	1–4, 7, 33–34, 38–39, 41–42, 44, 46–51, 54, 59, 61, 65, 67
frozen_group.py	40	40	0%	3–4, 6–7, 9–11, 13, 16, 47–49, 51–52, 55, 62, 74, 82, 89, 92, 95–97, 100, 103–104, 111, 114, 117, 122–123, 126–127, 130–132, 135–137, 139
gb_sas.py	26	26	0%	2–5, 7–9, 11, 14, 34–36, 39, 44, 47, 50, 53, 56, 59, 64, 67–69, 72–74
intram_by_civil_defence.py	26	26	0%	2–6, 8, 11, 14, 34–36, 38–39, 42–44, 46, 49, 54, 57, 60–62, 65–67
intram_by_itl1.py	38	38	0%	2–5, 7–8, 10, 13, 36–38, 41, 44–47, 50–52, 55–56, 59–62, 65–66, 69, 72, 75, 78–82, 87–89
intram_by_pg.py	27	27	0%	2–5, 7, 10, 13, 31–33, 36–38, 40, 43–45, 48, 51, 54, 57–60, 65–67
intram_by_sic.py	36	36	0%	2–5, 7, 10, 13, 32–34, 36, 39–40, 43–45, 47, 50–52, 57, 73–77, 79, 82, 85, 88, 91, 94–95, 98–100
intram_uk_itl_1_2.py	33	33	0%	2–5, 7–8, 10, 13, 40–42, 45–48, 51, 54, 57, 62, 65, 71, 74, 77–78, 81, 84, 87–90, 99–101
long_form.py	21	21	0%	2–5, 7–9, 11, 14, 33–35, 38, 41, 44, 47–49, 51–53
manifest_output.py	78	78	0%	1–4, 8, 11–12, 15, 33, 48–51, 54–55, 59–60, 65–66, 68, 71–75, 78–84, 86, 104–105, 112, 114–115, 122, 125, 127, 129, 131, 135, 145, 150–151, 157, 160–161, 163–164, 172–175, 182, 189, 191, 196, 198–200, 202–203, 205–206, 208–211, 213, 216, 218, 224–225, 228–229
map_output_cols.py	74	65	12%	21–22, 24, 27–28, 30–31, 34, 52–53, 55, 58, 61, 64, 71–75, 78, 82, 84, 86–87, 104, 114, 117, 122, 125–126, 129, 131, 146–147, 149, 154–156, 160, 179–180, 183, 186, 189, 192, 194, 196, 198, 200–201, 220, 222, 224–225, 228–229, 232–233, 251–252, 254, 256, 259, 262, 264
ni_sas.py	23	23	0%	2–8, 10, 13, 35–37, 40, 42, 45, 48, 53, 56–58, 61–63
outputs_helpers.py	24	10	58%	46, 53–55, 79–81, 84, 87, 89
short_form.py	39	18	53%	78, 85, 87, 110–112, 115, 118, 121, 124, 127, 130, 133–135, 137–139
tau.py	26	26	0%	2–8, 10, 13, 33–35, 40, 43, 46, 49, 52, 55, 58, 63, 66–68, 71–73
total_fte.py	14	14	0%	2–5, 8, 11, 24–25, 27–28, 34, 39–41
src/site_apportionment
__init__.py	0	0	100%
output_status_filtered.py	21	11	47%	16–17, 36, 39, 41–43, 45–47, 49
site_apportionment.py	119	46	61%	58, 98, 100–106, 216–217, 220, 224, 227, 234, 239, 247, 264, 267, 270–272, 276, 291–292, 295–296, 298–299, 402–403, 467, 471, 474, 477, 480, 483, 494, 497, 500, 503, 506, 509, 512, 515, 517
src/staging
__init__.py	0	0	100%
history_loader.py	32	2	93%	42, 54
spp_parser.py	14	0	100%
spp_snapshot_processing.py	34	0	100%
staging_helpers.py	144	110	23%	50–52, 54–56, 58, 68, 71, 96–102, 119, 122, 131–133, 136, 139–142, 144, 146, 165–166, 168–169, 171, 210, 213, 216, 219, 222, 225–226, 229, 232, 234, 236, 239, 242, 257–259, 261–263, 265–267, 271–272, 276, 278, 281, 283, 305–306, 310, 315–317, 339, 342, 344, 347, 352–354, 357–358, 361, 363, 368, 374, 397–398, 401, 406–407, 410, 413, 417, 424, 455–458, 460–461, 464–465, 501, 504–507, 510, 513, 516–519, 522, 524
validation.py	224	66	70%	17–18, 73, 207, 209, 309–310, 337, 340, 387–388, 399, 423, 437–438, 444, 448, 456–457, 463–464, 503–504, 511, 513, 516, 518, 539, 541–542, 545–546, 549–551, 553, 555, 558–559, 561, 563–564, 635, 637–638, 641–642, 645–646, 649, 652–653, 656, 658, 660–661, 674, 676–682, 685, 688
src/utils
__init__.py	0	0	100%
helpers.py	17	5	70%	14–15, 19–20, 22
local_file_mods.py	105	44	58%	33–38, 83, 133–135, 183–184, 195–199, 210–211, 222, 233, 244–245, 247, 258–259, 270–271, 280, 288, 299, 301–302, 304–305, 309–311, 315, 329–330, 333–334, 336
TOTAL	2489	1718	30%

Summary of tests

Tests	Skipped	Failures	Errors	Time
79	0 💤	0 ❌	0 🔥	1.678s ⏱️

[JenCheshire]

Look good - just a couple of (very) minor suggestions

more changes required, removing approval

[jwestw]

@AnneONS @JenCheshire @zorge69 I think everything is resolved now.

[JenCheshire]

Looks good to me

[JenCheshire]

One question re: doubling up NI staging in pipeline.py (see below), and a change to the config - otherwise all looking good

[AnneONS]

This is now ready to merge. I've tested running it.