Re-apply wrapper updates.

OpenBioSim · Jan 25, 2024 · a3cd1f4 · a3cd1f4
1 parent 34c3782
commit a3cd1f4
Show file tree

Hide file tree

Showing 34 changed files with 951 additions and 1,119 deletions.
diff --git a/wrapper/Mol/Atom.pypp.cpp b/wrapper/Mol/Atom.pypp.cpp
diff --git a/wrapper/Mol/AtomBeads.pypp.cpp b/wrapper/Mol/AtomBeads.pypp.cpp
@@ -483,20 +483,6 @@ void register_AtomBeads_class(){
                 , ( bp::arg("slice") )
                 , "" );
 
-        }
-        { //::SireMol::AtomProperty< SireMol::BeadNum >::set
-
-            typedef SireMol::AtomProperty< SireMol::BeadNum > exported_class_t;
-            typedef ::SireMol::AtomProperty< SireMol::BeadNum > & ( ::SireMol::AtomProperty< SireMol::BeadNum >::*set_function_type)( int,::SireMol::BeadNum const & ) ;
-            set_function_type set_function_value( &::SireMol::AtomProperty< SireMol::BeadNum >::set );
-
-            AtomBeads_exposer.def( 
-                "set"
-                , set_function_value
-                , ( bp::arg("i"), bp::arg("value") )
-                , bp::return_self< >()
-                , "" );
-
         }
         { //::SireMol::AtomProperty< SireMol::BeadNum >::set
 

diff --git a/wrapper/Mol/AtomCharges.pypp.cpp b/wrapper/Mol/AtomCharges.pypp.cpp
@@ -482,20 +482,6 @@ void register_AtomCharges_class(){
                 , ( bp::arg("slice") )
                 , "" );
 
-        }
-        { //::SireMol::AtomProperty< SireUnits::Dimension::PhysUnit< 0, 0, 0, 1, 0, 0, 0 > >::set
-
-            typedef SireMol::AtomProperty< SireUnits::Dimension::PhysUnit< 0, 0, 0, 1, 0, 0, 0 > > exported_class_t;
-            typedef ::SireMol::AtomProperty< SireUnits::Dimension::PhysUnit< 0, 0, 0, 1, 0, 0, 0 > > & ( ::SireMol::AtomProperty< SireUnits::Dimension::PhysUnit< 0, 0, 0, 1, 0, 0, 0 > >::*set_function_type)( int,::SireUnits::Dimension::PhysUnit< 0, 0, 0, 1, 0, 0, 0 > const & ) ;
-            set_function_type set_function_value( &::SireMol::AtomProperty< SireUnits::Dimension::PhysUnit< 0, 0, 0, 1, 0, 0, 0 > >::set );
-
-            AtomCharges_exposer.def( 
-                "set"
-                , set_function_value
-                , ( bp::arg("i"), bp::arg("value") )
-                , bp::return_self< >()
-                , "" );
-
         }
         { //::SireMol::AtomProperty< SireUnits::Dimension::PhysUnit< 0, 0, 0, 1, 0, 0, 0 > >::set
 

diff --git a/wrapper/Mol/AtomChiralities.pypp.cpp b/wrapper/Mol/AtomChiralities.pypp.cpp
@@ -490,20 +490,6 @@ void register_AtomChiralities_class(){
                 , ( bp::arg("slice") )
                 , "" );
 
-        }
-        { //::SireMol::AtomProperty< SireMol::Chirality >::set
-
-            typedef SireMol::AtomProperty< SireMol::Chirality > exported_class_t;
-            typedef ::SireMol::AtomProperty< SireMol::Chirality > & ( ::SireMol::AtomProperty< SireMol::Chirality >::*set_function_type)( int,::SireMol::Chirality const & ) ;
-            set_function_type set_function_value( &::SireMol::AtomProperty< SireMol::Chirality >::set );
-
-            AtomChiralities_exposer.def( 
-                "set"
-                , set_function_value
-                , ( bp::arg("i"), bp::arg("value") )
-                , bp::return_self< >()
-                , "" );
-
         }
         { //::SireMol::AtomProperty< SireMol::Chirality >::set
 

diff --git a/wrapper/Mol/AtomCoordMatcher.pypp.cpp b/wrapper/Mol/AtomCoordMatcher.pypp.cpp
@@ -0,0 +1,128 @@
+// This file has been generated by Py++.
+
+// (C) Christopher Woods, GPL >= 3 License
+
+#include "boost/python.hpp"
+#include "AtomCoordMatcher.pypp.hpp"
+
+namespace bp = boost::python;
+
+#include "SireError/errors.h"
+
+#include "SireMaths/vector.h"
+
+#include "SireStream/datastream.h"
+
+#include "SireUnits/units.h"
+
+#include "atom.h"
+
+#include "atomidentifier.h"
+
+#include "atomidx.h"
+
+#include "atommatcher.h"
+
+#include "atommatchers.h"
+
+#include "atomname.h"
+
+#include "atomselection.h"
+
+#include "evaluator.h"
+
+#include "moleculeinfodata.h"
+
+#include "moleculeview.h"
+
+#include "mover.h"
+
+#include "mover.hpp"
+
+#include "selector.hpp"
+
+#include "tostring.h"
+
+#include "atommatchers.h"
+
+SireMol::AtomCoordMatcher __copy__(const SireMol::AtomCoordMatcher &other){ return SireMol::AtomCoordMatcher(other); }
+
+#include "Qt/qdatastream.hpp"
+
+#include "Helpers/str.hpp"
+
+#include "Helpers/release_gil_policy.hpp"
+
+void register_AtomCoordMatcher_class(){
+
+    { //::SireMol::AtomCoordMatcher
+        typedef bp::class_< SireMol::AtomCoordMatcher, bp::bases< SireMol::AtomMatcher, SireBase::Property > > AtomCoordMatcher_exposer_t;
+        AtomCoordMatcher_exposer_t AtomCoordMatcher_exposer = AtomCoordMatcher_exposer_t( "AtomCoordMatcher", "This is a simple atom matcher that matches the atoms based\non their coordinates - e.g. matches the atom in molinfo0\nto those in molinfo1 by their closest coordinates.\n\nAuthor: Lester Hedges\n", bp::init< >("Constructor") );
+        bp::scope AtomCoordMatcher_scope( AtomCoordMatcher_exposer );
+        AtomCoordMatcher_exposer.def( bp::init< bool >(( bp::arg("zero_com") ), "Constructor") );
+        AtomCoordMatcher_exposer.def( bp::init< SireMol::AtomCoordMatcher const & >(( bp::arg("arg0") ), "Copy constructor") );
+        AtomCoordMatcher_exposer.def( bp::self != bp::self );
+        { //::SireMol::AtomCoordMatcher::operator=
+
+            typedef ::SireMol::AtomCoordMatcher & ( ::SireMol::AtomCoordMatcher::*assign_function_type)( ::SireMol::AtomCoordMatcher const & ) ;
+            assign_function_type assign_function_value( &::SireMol::AtomCoordMatcher::operator= );
+
+            AtomCoordMatcher_exposer.def( 
+                "assign"
+                , assign_function_value
+                , ( bp::arg("other") )
+                , bp::return_self< >()
+                , "" );
+
+        }
+        AtomCoordMatcher_exposer.def( bp::self == bp::self );
+        { //::SireMol::AtomCoordMatcher::toString
+
+            typedef ::QString ( ::SireMol::AtomCoordMatcher::*toString_function_type)(  ) const;
+            toString_function_type toString_function_value( &::SireMol::AtomCoordMatcher::toString );
+
+            AtomCoordMatcher_exposer.def( 
+                "toString"
+                , toString_function_value
+                , bp::release_gil_policy()
+                , "" );
+
+        }
+        { //::SireMol::AtomCoordMatcher::typeName
+
+            typedef char const * ( *typeName_function_type )(  );
+            typeName_function_type typeName_function_value( &::SireMol::AtomCoordMatcher::typeName );
+
+            AtomCoordMatcher_exposer.def( 
+                "typeName"
+                , typeName_function_value
+                , bp::release_gil_policy()
+                , "" );
+
+        }
+        { //::SireMol::AtomCoordMatcher::what
+
+            typedef char const * ( ::SireMol::AtomCoordMatcher::*what_function_type)(  ) const;
+            what_function_type what_function_value( &::SireMol::AtomCoordMatcher::what );
+
+            AtomCoordMatcher_exposer.def( 
+                "what"
+                , what_function_value
+                , bp::release_gil_policy()
+                , "" );
+
+        }
+        AtomCoordMatcher_exposer.staticmethod( "typeName" );
+        AtomCoordMatcher_exposer.def( "__copy__", &__copy__);
+        AtomCoordMatcher_exposer.def( "__deepcopy__", &__copy__);
+        AtomCoordMatcher_exposer.def( "clone", &__copy__);
+        AtomCoordMatcher_exposer.def( "__rlshift__", &__rlshift__QDataStream< ::SireMol::AtomCoordMatcher >,
+                            bp::return_internal_reference<1, bp::with_custodian_and_ward<1,2> >() );
+        AtomCoordMatcher_exposer.def( "__rrshift__", &__rrshift__QDataStream< ::SireMol::AtomCoordMatcher >,
+                            bp::return_internal_reference<1, bp::with_custodian_and_ward<1,2> >() );
+        AtomCoordMatcher_exposer.def_pickle(sire_pickle_suite< ::SireMol::AtomCoordMatcher >());
+        AtomCoordMatcher_exposer.def( "__str__", &__str__< ::SireMol::AtomCoordMatcher > );
+        AtomCoordMatcher_exposer.def( "__repr__", &__str__< ::SireMol::AtomCoordMatcher > );
+    }
+
+}
diff --git a/wrapper/Mol/AtomCoordMatcher.pypp.hpp b/wrapper/Mol/AtomCoordMatcher.pypp.hpp
@@ -0,0 +1,10 @@
+// This file has been generated by Py++.
+
+// (C) Christopher Woods, GPL >= 3 License
+
+#ifndef AtomCoordMatcher_hpp__pyplusplus_wrapper
+#define AtomCoordMatcher_hpp__pyplusplus_wrapper
+
+void register_AtomCoordMatcher_class();
+
+#endif//AtomCoordMatcher_hpp__pyplusplus_wrapper
diff --git a/wrapper/Mol/AtomCoords.pypp.cpp b/wrapper/Mol/AtomCoords.pypp.cpp
@@ -625,20 +625,6 @@ void register_AtomCoords_class(){
                 , bp::return_self< >()
                 , "" );
 
-        }
-        { //::SireMol::AtomProperty< SireMaths::Vector >::set
-
-            typedef SireMol::AtomProperty< SireMaths::Vector > exported_class_t;
-            typedef ::SireMol::AtomProperty< SireMaths::Vector > & ( ::SireMol::AtomProperty< SireMaths::Vector >::*set_function_type)( int,::SireMaths::Vector const & ) ;
-            set_function_type set_function_value( &::SireMol::AtomProperty< SireMaths::Vector >::set );
-
-            AtomCoords_exposer.def( 
-                "set"
-                , set_function_value
-                , ( bp::arg("i"), bp::arg("value") )
-                , bp::return_self< >()
-                , "" );
-
         }
         { //::SireMol::AtomProperty< SireMaths::Vector >::size
 

diff --git a/wrapper/Mol/AtomDoubleArrayProperty.pypp.cpp b/wrapper/Mol/AtomDoubleArrayProperty.pypp.cpp
@@ -482,20 +482,6 @@ void register_AtomDoubleArrayProperty_class(){
                 , ( bp::arg("slice") )
                 , "" );
 
-        }
-        { //::SireMol::AtomProperty< SireBase::DoubleArrayProperty >::set
-
-            typedef SireMol::AtomProperty< SireBase::DoubleArrayProperty > exported_class_t;
-            typedef ::SireMol::AtomProperty< SireBase::DoubleArrayProperty > & ( ::SireMol::AtomProperty< SireBase::DoubleArrayProperty >::*set_function_type)( int,::SireBase::DoubleArrayProperty const & ) ;
-            set_function_type set_function_value( &::SireMol::AtomProperty< SireBase::DoubleArrayProperty >::set );
-
-            AtomDoubleArrayProperty_exposer.def( 
-                "set"
-                , set_function_value
-                , ( bp::arg("i"), bp::arg("value") )
-                , bp::return_self< >()
-                , "" );
-
         }
         { //::SireMol::AtomProperty< SireBase::DoubleArrayProperty >::set