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Adapt notebook to work with cinnabar 0.4 #88

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merged 4 commits into from
Nov 3, 2023
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hannahbaumann
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Binder 👈 Launch a binder notebook on branch OpenFreeEnergy/ExampleNotebooks/fix_cinnabar_ipynb

@IAlibay
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IAlibay commented Oct 20, 2023

@hannahbaumann could you add this folder to the CI command? We should try to have it run here too

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Thanks @hannahbaumann - couple of small things + CI

I wasn't able to run this locally on a fresh cinnabar install though :/

" 'experimental_error': 0.17,\n",
" 'experimental_estimate': -11.31},\n",
" 'lig_jmc_28': {'calculated_error': 0.18,\n",
" 'calculated_estimate': -11.01,\n",
" 'lig_jmc_28': {'calculated_error': 0.07933473388119473,\n",
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Could you do a 2d.p. truncation on the results writing so calculated & experimental are consistent? (lines 452-453 & 463-464)

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@IAlibay I suspect it might need a cinnabar release, I'll do it this morning

@IAlibay IAlibay changed the title Adapt notebook to work with cinnabar0.3 Adapt notebook to work with cinnabar 0.4 Nov 3, 2023
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All works fine locally, thanks @hannahbaumann !

@IAlibay IAlibay merged commit 049759b into main Nov 3, 2023
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@IAlibay IAlibay deleted the fix_cinnabar_ipynb branch November 3, 2023 21:20
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3 participants