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Implement Connectivity Strategy#1

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ianmkenney wants to merge 12 commits intomainOpenFreeEnergy/stratocaster:mainfrom feature/connectivity_strategyOpenFreeEnergy/stratocaster:feature/connectivity_strategyCopy head branch name to clipboard

+529-11

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Commits on Oct 6, 2024

• Created the ConnectivityStrategy class and added tests

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  ianmkenney

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  6588354

Commits on Oct 29, 2024

• Implemented ConnectivityStrategySettings and weight penalty

  ianmkenney

  committed
  4620ed6

Commits on Oct 30, 2024

• Added more model validation

  ianmkenney

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  1e1dbaa

• Change property name from num_components to n_protocol_dag_results

  ianmkenney

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  58f0cc4

• Added normalization to StrategyResult

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  ianmkenney

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  a66cb55

Commits on Nov 5, 2024

• Enforce correct settings for each strategy

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  ianmkenney

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  a18dd82

Commits on Nov 13, 2024

• Improved error messages around invalid settings arguments

  ianmkenney

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  6964024

• Connectivity cutoff now applies to unnormalized weights

  ianmkenney

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  9572c38

• Merge remote-tracking branch 'origin/main' into feature/connectivity_strategy

  ianmkenney

  committed
  9358d20

• Removed debugging print statement

  ianmkenney

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  5f9ff78

Commits on Nov 20, 2024

• Increase testing coverage

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  ianmkenney

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  924256f

• Test determinism for connectivity strategies

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  ianmkenney

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  f326568