add steps to docker and environment

OpenMS · Mar 7, 2025 · 64a4397 · 64a4397
1 parent 89a84d7
commit 64a4397
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diff --git a/Dockerfile b/Dockerfile
@@ -141,6 +141,8 @@ RUN echo "0 3 * * * /root/miniforge3/envs/streamlit-env/bin/python /app/clean-up
 RUN echo "#!/bin/bash" > /app/entrypoint.sh && \
     echo "source /root/miniforge3/bin/activate streamlit-env" >> /app/entrypoint.sh && \
     echo "service cron start" >> /app/entrypoint.sh && \
+    echo "redis-server" >> /app/entrypoint.sh && \
+    echo "rq worker --with-scheduler -q mzml_workflow_run" >> /app/entrypoint.sh && \
     echo "streamlit run app.py" >> /app/entrypoint.sh
 # make the script executable
 RUN chmod +x /app/entrypoint.sh

diff --git a/Dockerfile_simple b/Dockerfile_simple
@@ -87,6 +87,8 @@ RUN echo "0 3 * * * /root/miniforge3/envs/streamlit-env/bin/python /app/clean-up
 RUN echo "#!/bin/bash" > /app/entrypoint.sh
 RUN echo "source /root/miniforge3/bin/activate streamlit-env" >> /app/entrypoint.sh && \
     echo "service cron start" >> /app/entrypoint.sh && \
+    echo "redis-server" >> /app/entrypoint.sh && \
+    echo "rq worker --with-scheduler -q mzml_workflow_run" >> /app/entrypoint.sh && \
     echo "streamlit run app.py" >> /app/entrypoint.sh
 # make the script executable
 RUN chmod +x /app/entrypoint.sh

diff --git a/environment.yml b/environment.yml
@@ -15,3 +15,5 @@ dependencies:
         - captcha==0.5.0
         - pyopenms_viz==1.0.0
         - streamlit-js-eval
+        - redis==5.2.1
+        - rq==2.1.0