The Pandemic PACT monitors and analyses global funding and research evidence related to diseases with pandemic potential, as well as broader research preparedness efforts, and is equipped to pivot in response to outbreaks. It collects, curates, codes, and analyses data in alignment with WHO priority diseases and other selected illnesses, including pandemic influenza, mpox, and plague. Pandemic PACT aims to guide policy and decision-making for research funders, policymakers, researchers, multilateral agencies. The Pandemic PACT data is publicly available for download from its website and from Figshare. This package provides an application programming interface (API) to the research programme’s Figshare repository to provide programmatic access to its publicly available tracker data along with it’s other data products.
{pactr} provides functions to interface with Pandemic PACT’s
Figshare repository for
programmatic access to its contents. These functions are wrappers to
specific functions of the {deposits}
package which provides
the underlying universal interface to various online research data
deposition services including Figshare. Current Figshare-specific
functionalities available in {pactr} are:
-
Listing of outputs/assets available from the Panedmic PACT Figshare repository;
-
Download of outputs/assets available from the Pandemic PACT Figshare repository; and,
-
Reading of dataset outputs/assets available from the Pandemic PACT Figshare repository.
{pactr} is not yet on CRAN but can be installed through the Oxford
IHTM r-universe with:
install.packages(
"pactr",
repos = c("https://oxfordihtm.r-universe.dev", "https://cloud.r-project.org")
)Alternatively, {pactr} can be installed directly from
GitHub using the {remotes}
package with the following command:
if (!requireNamespace("remotes")) install.packages("remotes")
remotes::install_github("OxfordIHTM/pactr")pactr can then be loaded for use with:
library(pactr)To list available outputs/assets from the Pandemic PACT Figshare repository, issue the following command:
pact_list()The output is a data.frame containing metadata regarding contents of
the Figshare Pandemic PACT group. The information within the metadata
are those provided by Figshare’s application programming interface
(API) and are either set by the Pandemic
PACT data team or by Figshare. The data.frame would have the following
fields:
#> [1] "project_id" "id" "title"
#> [4] "doi" "handle" "url"
#> [7] "published_date" "thumb" "defined_type"
#> [10] "defined_type_name" "group_id" "url_private_api"
#> [13] "url_public_api" "url_private_html" "url_public_html"
#> [16] "timeline" "resource_title" "resource_doi"
This function is useful in getting an overview of what is currently available in the Pandemic PACT Figshare repository.
To download a specific output/asset - say the scoping review data - from the Pandemic PACT Figshare repository, issue the following commands:
## Get the unique identifier for the scoping review data from Figshare ----
file_id <- pact_list() |>
subset(title == "Scoping Review Data", select = id) |>
unlist()
pact_download(id = file_id, path = ".")This will download the file Scoping_Review-Data.xlsx from the Pandemic
PACT Figshare repository into the current working directory.
To read the Pandemic PACT tracker dataset into R, issue the following command:
pact_read_data_tracker()which outputs a data.frame with 4637 records and 860 fields.
#> 'data.frame': 4637 obs. of 860 variables:
#> $ PactID : chr "C00153" "C00154" "C00155" "C00156" ...
#> $ Grant.Number : chr "unknown" "unknown" "unknown" "unknown" ...
#> $ Grant.Title.Original : chr "Serological studies to quantify SARS-CoV-2 population infection risk in Singapore, Hong Kong and Thailand" "African COVID-19 Preparedness (AFRICO19)" "COVID-19 Intervention Modelling for East Africa (CIMEA)" "The African coaLition for Epidemic Research, Response and Training, Clinical Characterization Protocol (ALERRT CCP)" ...
#> $ Grant.Title.Eng : chr "Serological studies to quantify SARS-CoV-2 population infection risk in Singapore, Hong Kong and Thailand" "African COVID-19 Preparedness (AFRICO19)" "COVID-19 Intervention Modelling for East Africa (CIMEA)" "The African coaLition for Epidemic Research, Response and Training, Clinical Characterization Protocol (ALERRT CCP)" ...
#> $ Award.Amount.Converted : num 1043108 2462448 1699974 1742202 2484600 ...
#> $ Abstract.Eng : chr "We propose a prospective serological study to investigate the incidence of SARS-CoV-2 infection in the general "| __truncated__ "Our project, AFRICO19, will enhance capacity to understand SARS-CoV-2/hCoV-19 infection in three regions of Afr"| __truncated__ "COVID-19 is a global threat to health, with many countries reporting extended outbreaks. To date 9 countries in"| __truncated__ "As part of the response to the emergence of COVID-19, the World Health Organization Africa Regional Office is o"| __truncated__ ...
#> $ Laysummary : chr "" "" "" "" ...
#> $ ODA.funding.used : chr "Pending" "Pending" "Pending" "Pending" ...
#> $ Grant.Type : chr "Pending" "New Grant" "Pending" "Pending" ...
#> $ Grant.Start.Year : int 2020 2020 2020 2020 2020 2020 2020 2020 2020 2020 ...
#> $ Study.Subject..choice.Animals. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Subject..choice.Bacteria. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Subject..choice.Human.Populations. : chr "Checked" "Checked" "Checked" "Checked" ...
#> $ Study.Subject..choice.Disease.Vectors. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Subject..choice.Viruses. : chr "Unchecked" "Checked" "Unchecked" "Unchecked" ...
#> $ Study.Subject..choice.Environment. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Subject..choice.Other. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Subject..choice.Unspecified. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Subject..choice.Not.applicable. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ If..Study.Subject..Please.Specific. : chr "" "" "" "" ...
#> $ Ethnicity..choice.Asian. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Ethnicity..choice.Black. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Ethnicity..choice.White. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Ethnicity..choice.Mixed. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Ethnicity..choice.Other. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Ethnicity..choice.Unspecified. : chr "Checked" "Checked" "Checked" "Checked" ...
#> $ Ethnicity..choice.Not.applicable. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ If..Other.Ethnicity..Please.Specific. : chr "" "" "" "" ...
#> $ Age.Groups..choice.Adolescent..em..font.color.blue..13.years.to.17.years...font...em.. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Age.Groups..choice.Adults..em..font.color.blue..18.and.older...font...em.. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Age.Groups..choice.Children..em..font.color.blue..1.year.to.12.years...font...em.. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Age.Groups..choice.Infants..em..font.color.blue..1.month.to.1.year...font...em.. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Age.Groups..choice.Newborns..em..font.color.blue..birth.to.1.month...font...em.. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Age.Groups..choice.Older.adults..em..font.color.blue..65.and.older...font...em.. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Age.Groups..choice.Other. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Age.Groups..choice.Unspecified. : chr "Checked" "Checked" "Checked" "Checked" ...
#> $ Age.Groups..choice.Not.Applicable. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ If..Other.AgeGroups..Please.Specific. : chr "" "" "" "" ...
#> $ Rurality..choice.Rural.Population.Setting. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Rurality..choice.Suburban.Population.Setting. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Rurality..choice.Urban.Population.Setting. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Rurality..choice.Other. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Rurality..choice.Unspecified. : chr "Checked" "Checked" "Checked" "Unchecked" ...
#> $ Rurality..choice.Not.applicable. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ If..Other.Rurality..Please.Specific. : chr "" "" "" "" ...
#> $ Vulnerable.Population..choice.Disabled.persons. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Vulnerable.Population..choice.Drug.users. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Vulnerable.Population..choice.Internally.Displaced.and.Migrants. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Vulnerable.Population..choice.Indigenous.People. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Vulnerable.Population..choice.Sexual.and.gender.minorities. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Vulnerable.Population..choice.Prisoners. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Vulnerable.Population..choice.Sex.workers. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Vulnerable.Population..choice.Smokers. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Vulnerable.Population..choice.Women. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Vulnerable.Population..choice.Pregnant.women. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Vulnerable.Population..choice.Individuals.with.multimorbidity. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Vulnerable.Population..choice.Minority.communities.unspecified. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Vulnerable.Population..choice.Vulnerable.populations.unspecified. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Vulnerable.Population..choice.Other. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Vulnerable.Population..choice.Unspecified. : chr "Checked" "Checked" "Checked" "Checked" ...
#> $ Vulnerable.Population..choice.Not.applicable. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ If..Other.Vulnerable.Population..Please.Specific. : chr "" "" "" "" ...
#> $ Occupational.Groups..choice.Farmers. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Occupational.Groups..choice.Emergency.Responders. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Occupational.Groups..choice.Military.Personnel. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Occupational.Groups..choice.Social.Workers. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Occupational.Groups..choice.Caregivers. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Occupational.Groups..choice.Health.Personnel. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Occupational.Groups..choice.Hospital.personnel. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Occupational.Groups..choice.Nurses.and.Nursing.Staff. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Occupational.Groups..choice.Physicians. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Occupational.Groups..choice.Dentists.and.dental.staff. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Occupational.Groups..choice.Veterinarians. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Occupational.Groups..choice.Volunteers. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Occupational.Groups..choice.Other. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Occupational.Groups..choice.Unspecified. : chr "Checked" "Checked" "Checked" "Checked" ...
#> $ Occupational.Groups..choice.Not.applicable. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ If..Other.OccupationalGroups..Please.Specific. : chr "" "" "" "" ...
#> $ Study.Type..choice.Biological.Specimen.Banks. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Case.Reports. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Clinical.Conference. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Clinical.Study. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Clinical.Trial. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Comparative.Study. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Consensus.Development.Conference. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Evaluation.Study. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Laboratory.work. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Meta.Analysis. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Observational.Study. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Policy.report. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Review. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Secondary.Data.Analysis. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Study..design.unspecified. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Systematic.Review. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Validation.Study. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Other. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Unspecified. : chr "Checked" "Checked" "Checked" "Checked" ...
#> $ Study.Type..choice.Not.applicable. : chr "Unchecked" "Unchecked" "Unchecked" "Unchecked" ...
#> $ Study.Type..choice.Clinical. : chr "Unchecked" "Checked" "Unchecked" "Unchecked" ...
#> [list output truncated]
This function reads the labelled tracker dataset by default. If the raw dataset is required, then issue the following command:
pact_read_data_tracker(tracker_type = "raw")which outputs a data.frame with 4638 records and 860 fields.
#> 'data.frame': 4638 obs. of 860 variables:
#> $ pactid : chr "SDS001" "C00153" "C00154" "C00155" ...
#> $ grant_number : chr "unknown" "unknown" "unknown" "unknown" ...
#> $ grant_title_original : chr "Dummy record" "Serological studies to quantify SARS-CoV-2 population infection risk in Singapore, Hong Kong and Thailand" "African COVID-19 Preparedness (AFRICO19)" "COVID-19 Intervention Modelling for East Africa (CIMEA)" ...
#> $ grant_title_eng : chr "Dummy record" "Serological studies to quantify SARS-CoV-2 population infection risk in Singapore, Hong Kong and Thailand" "African COVID-19 Preparedness (AFRICO19)" "COVID-19 Intervention Modelling for East Africa (CIMEA)" ...
#> $ award_amount_converted : num 1234567 1043108 2462448 1699974 1742202 ...
#> $ abstract : chr "A dummy record to simulate a version update" "We propose a prospective serological study to investigate the incidence of SARS-CoV-2 infection in the general "| __truncated__ "Our project, AFRICO19, will enhance capacity to understand SARS-CoV-2/hCoV-19 infection in three regions of Afr"| __truncated__ "COVID-19 is a global threat to health, with many countries reporting extended outbreaks. To date 9 countries in"| __truncated__ ...
#> $ laysummary : chr "N/A" "" "" "" ...
#> $ oda_funding_used : int -77 -77 -77 -77 -77 -77 -77 -77 -77 -77 ...
#> $ grant_type : int -77 -77 1 -77 -77 -77 1 1 -77 -77 ...
#> $ grant_start_year : int 2020 2020 2020 2020 2020 2020 2020 2020 2020 2020 ...
#> $ study_subject___1 : int 0 0 0 0 0 0 0 1 0 0 ...
#> $ study_subject___2 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_subject___3 : int 1 1 1 1 1 1 1 1 1 1 ...
#> $ study_subject___4 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_subject___5 : int 0 0 1 0 0 0 0 0 0 0 ...
#> $ study_subject___6 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_subject____88 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_subject____99 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_subject____9999 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_subject_other : chr "" "" "" "" ...
#> $ ethnicity___1 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ ethnicity___2 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ ethnicity___3 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ ethnicity___4 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ ethnicity____88 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ ethnicity____99 : int 1 1 1 1 1 1 1 1 1 1 ...
#> $ ethnicity____9999 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ ethnicity_other : chr "" "" "" "" ...
#> $ age_groups___1 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ age_groups___2 : int 0 0 0 0 0 0 1 0 1 0 ...
#> $ age_groups___5 : int 0 0 0 0 0 0 1 0 0 0 ...
#> $ age_groups___6 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ age_groups___7 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ age_groups___3 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ age_groups____88 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ age_groups____99 : int 1 1 1 1 1 1 0 1 0 1 ...
#> $ age_groups____9999 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ agegroups_other : chr "" "" "" "" ...
#> $ rurality___1 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ rurality___2 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ rurality___3 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ rurality____88 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ rurality____99 : int 1 1 1 1 0 1 1 1 0 1 ...
#> $ rurality____9999 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ rurality_other : chr "" "" "" "" ...
#> $ vulnerable_population___1 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ vulnerable_population___2 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ vulnerable_population___3 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ vulnerable_population___4 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ vulnerable_population___5 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ vulnerable_population___6 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ vulnerable_population___7 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ vulnerable_population___8 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ vulnerable_population___9 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ vulnerable_population___10 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ vulnerable_population___13 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ vulnerable_population___11 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ vulnerable_population___12 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ vulnerable_population____88 : int 0 0 0 0 0 1 0 0 0 0 ...
#> $ vulnerable_population____99 : int 1 1 1 1 1 0 1 1 1 1 ...
#> $ vulnerable_population____9999 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ vulnerable_population_other : chr "" "" "" "" ...
#> $ occupational_groups___1 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ occupational_groups___2 : int 0 0 0 0 0 0 0 0 1 0 ...
#> $ occupational_groups___3 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ occupational_groups___4 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ occupational_groups___5 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ occupational_groups___6 : int 0 0 0 0 0 0 0 0 1 0 ...
#> $ occupational_groups___7 : int 0 0 0 0 0 0 0 0 1 0 ...
#> $ occupational_groups___8 : int 0 0 0 0 0 0 0 0 1 0 ...
#> $ occupational_groups___9 : int 0 0 0 0 0 0 0 0 1 0 ...
#> $ occupational_groups___10 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ occupational_groups___11 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ occupational_groups___12 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ occupational_groups____88 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ occupational_groups____99 : int 1 1 1 1 1 1 1 1 0 1 ...
#> $ occupational_groups____9999 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ occupationalgroups_other : chr "" "" "" "" ...
#> $ study_type___1 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type___2 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type___3 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type___4 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type___5 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type___6 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type___7 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type___8 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type___9 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type___10 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type___11 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type___12 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type___13 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type___14 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type___15 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type___16 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type___17 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type____88 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type____99 : int 1 1 1 1 1 1 1 1 1 1 ...
#> $ study_type____9999 : int 0 0 0 0 0 0 0 0 0 0 ...
#> $ study_type_main___5 : int 0 0 1 0 0 1 1 0 0 1 ...
#> [list output truncated]
To cite the {pactr} package, please use the suggested citation
provided by a call to the citation() function as follows:
citation("pactr")
#> To cite pactr in publications use:
#>
#> Ernest Guevarra (2024). _pactr: An Interface to the Pandemic PACT
#> Repository_. R package version 0.0.9000,
#> <https://oxford-ihtm.io/pactr/>.
#>
#> A BibTeX entry for LaTeX users is
#>
#> @Manual{,
#> title = {pactr: An Interface to the Pandemic PACT Repository},
#> author = {{Ernest Guevarra}},
#> year = {2024},
#> note = {R package version 0.0.9000},
#> url = {https://oxford-ihtm.io/pactr/},
#> }To cite the Pandemic PACT Tracker dataset, please use the suggested
citation provided by a call to the pact_cite() function as follows:
pact_cite(id = 24763548) ## cite the labelled version of the tracker dataset
#> To cite Pandemic PACT Grant Tracker (labelled) in publications use:
#>
#> Pandemic PACT team (2023). "Pandemic PACT Grant Tracker (labelled).
#> dataset version 1." doi:10.25446/oxford.24763548.v1
#> <https://doi.org/10.25446/oxford.24763548.v1>.
#>
#> A BibTeX entry for LaTeX users is
#>
#> @Misc{,
#> title = {Pandemic PACT Grant Tracker (labelled). dataset version 1},
#> author = {{Pandemic PACT team}},
#> year = {2023},
#> doi = {10.25446/oxford.24763548.v1},
#> }Feedback, bug reports and feature requests are welcome; file issues or seek support here. If you would like to contribute to the package, please see our contributing guidelines.
This project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.