PEtab Select v0.3.0

What's Changed

Major changes

See the example notebooks in the docs for examples of these breaking changes.

• breaking: petab_select.ui.end_iteration now includes a required problem argument
• breaking: plot code is refactored to use PlotData -- see the visualization example notebook in the docs
• breaking: use petab_select_problem.state.models to access all models across all iterations of model selection. Other methods will be deprecated in future
• breaking: do not use lists of petab_select.Model. Instead use petab_select.Models (can be constructed like Models([model_1, ...]). Models acts like a list and a dict (e.g. can look up models by model hash).
• breaking: in model space files, petab_yaml has been renamed model_subspace_petab_yaml for a small clarification
• several methods to analyze results after model selection are now available in petab_select.analyze
• schemas for validation of model, models, and problem YAML files are available in doc/standard

Full changelog

• Set minimum versions for required dependencies by @dilpath in #123
• Models class by @dilpath in #121
• Add post--model-selection analysis methods by @dilpath in #125
• Create standard/schema for a Model by @dilpath in #130
• Create standard/schema for Models by @dilpath in #131
• Create standard/schema for Problem by @dilpath in #132
• Store all calibrated models in Problem.state; update all notebooks by @dilpath in #134
• Method to compute criterion weights (by @vwiela) by @dilpath in #136
• Refactor plotting code by @dilpath in #137
• Move old changelog out of main directory by @dilpath in #138
• Release v0.3.0 by @dilpath in #139

Thanks to @dweindl for reviewing these changes.

Full Changelog: v0.2.1...v0.3.0