YFT Review Analysis

1. Plot both 2017 and 2020 diagnostic, as a starting point for stepwise analysis

2. Share stepwise findings with colleagues

3. Create a doitall that runs the 2020 diagnostic

   • find R analyses required
   • interleave MFCL and R calls

4. Send 2020 diagnostic run to John

   • converting it to catch conditioning

5. Make sure we can run the 2017 diagnostic

6. From the 2017 diagnostic, run one-off steps:

   • 2017 diagnostic + selectivities
   • 2017 diagnostic + otoliths
   • 2017 diagnostic + tags
   • 2017 diagnostic + age10

7. From the 2017 diagnostic, run combinations:

   • selectivities + otoliths + tags

8. From the 2017 diagnostic, run new selectivity options:

   • intermediate steps, e.g., between diagnostic and selectivities
   • think of alternative ways to model the selectivities

9. Tease apart the CondAge stepwise model run:

   • otoliths
   • catchability constant between seasons
   • catchability constant between years
   • maturity not converted to age

10. Ask how to change regional structure