github actions: testing pnetcdf-c built from source #4
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| name: Build and Test Linux with pnetcdf-c built from source | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - test-github-actions | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| build-linux: | |
| name: Python (${{ matrix.python-version }}) | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| env: | |
| MPICH_VERSION: 4.2.0 | |
| PNETCDF_VERSION: repo | |
| PNETCDF_DIR: ${{ github.workspace }}/PnetCDF-install | |
| MPICH_DIR: ${{ github.workspace }}/mpich-install | |
| CC: mpicc.mpich | |
| strategy: | |
| matrix: | |
| python-version: ["3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Build MPICH | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| echo "Install MPICH ${MPICH_VERSION} in $MPICH_DIR" | |
| rm -rf MPICH ; mkdir MPICH ; cd MPICH | |
| wget -q https://www.mpich.org/static/downloads/${MPICH_VERSION}/mpich-${MPICH_VERSION}.tar.gz | |
| gzip -dc mpich-${MPICH_VERSION}.tar.gz | tar -xf - | |
| cd mpich-${MPICH_VERSION} | |
| ./configure --prefix=$MPICH_DIR \ | |
| --silent \ | |
| --enable-romio \ | |
| --with-file-system=ufs \ | |
| --with-device=ch3:sock \ | |
| --enable-fortran \ | |
| --enable-shared\ | |
| CC=gcc FC=gfortran \ | |
| FFLAGS=-fallow-argument-mismatch \ | |
| FCFLAGS=-fallow-argument-mismatch | |
| make -s LIBTOOLFLAGS=--silent V=1 -j 4 install > qout 2>&1 | |
| make -s -j 4 distclean >> qout 2>&1 | |
| - name: Install Other Ubuntu Dependencies | |
| run: | | |
| set -x | |
| sudo apt-get update | |
| sudo apt-get install csh | |
| sudo apt-get install automake autoconf libtool libtool-bin m4 | |
| # sudo apt-get install mpich libmpich-dev libhdf5-mpich-dev | |
| # sudo apt-get install mpich libmpich-dev libhdf5-mpich-dev libcurl4-openssl-dev bzip2 libsnappy-dev libblosc-dev libzstd-dev | |
| echo "Build PnetCDF from source" | |
| git clone -q https://github.com/Parallel-NetCDF/PnetCDF.git | |
| pushd PnetCDF | |
| autoreconf -i | |
| ./configure --prefix $PNETCDF_DIR --enable-shared --enable-debug --disable-fortran --disable-cxx --with-mpi=$MPICH_DIR | |
| make -j 8 | |
| make install | |
| popd | |
| - name: Install python dependencies via pip | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install numpy cython cftime pytest twine wheel check-manifest | |
| export MPICC=$MPICH_DIR/bin | |
| pip install mpi4py | |
| - name: Install pncpy | |
| run: | | |
| export PATH=${PNETCDF_DIR}/bin:${PATH} | |
| python setup.py install | |
| - name: Test | |
| run: | | |
| export PATH=${PNETCDF_DIR}/bin:${PATH} | |
| # serial | |
| csh ./test_all.csh | |
| export NRPOC=3 && csh ./test_all.csh | |
| export NRPOC=8 && csh ./test_all.csh | |
| export NRPOC=10 && csh ./test_all.csh | |
| cd examples | |
| csh ./run_examples.csh /tmp | |
| if [ $? -ne 0 ] ; then | |
| echo "example program failed!" | |
| exit 1 | |
| else | |
| echo "example program passed!" | |
| fi | |
| # - name: Tarball | |
| # run: | | |
| # export PATH=${NETCDF_DIR}/bin:${PATH} | |
| # python setup.py --version | |
| # check-manifest --version | |
| # check-manifest --verbose | |
| # pip wheel . -w dist --no-deps | |
| # twine check dist/* |