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@ParkinsonLab

ParkinsonLab

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  1. Metabolic-pathways-in-microbiomes Metabolic-pathways-in-microbiomes Public

    Scripts for book chapter "Analyzing Metabolic pathways in microbiomes"

    R 3 2

  2. Metatranscriptome-Workshop Metatranscriptome-Workshop Public

    Metatranscriptomics Tutorial

    55 23

  3. DETECT-v2 DETECT-v2 Public

    Version 2 of the Density Estimation Tool for Enzyme ClassificaTion: scripts for enzyme annotation and pipeline for making the DETECT database

    Python 4 3

  4. PopNet PopNet Public

    Python 3 2

  5. Eukaryotic_microbiome_analysis Eukaryotic_microbiome_analysis Public

    R 5

  6. Metabolic-network-visualization Metabolic-network-visualization Public

    Visualizations of metabolic networks created by the Parkinson lab members

    1

Repositories

Showing 10 of 31 repositories
  • quackers Public

    Parkinson Lab's MG pipeline prototype

    ParkinsonLab/quackers’s past year of commit activity
    Python 1 0 2 0 Updated Nov 22, 2024
  • bacarena_docker Public

    stash for bacarena docker build/install for version-lock/distribution among lab.

    ParkinsonLab/bacarena_docker’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Nov 4, 2024
  • 16S_MGX_Workshops Public Forked from bioinformaticsdotca/AMB_2024
    ParkinsonLab/16S_MGX_Workshops’s past year of commit activity
    0 1 0 0 Updated Oct 26, 2024
  • Chicken_microbiome Public

    Repository for Chicken Microbiome project

    ParkinsonLab/Chicken_microbiome’s past year of commit activity
    R 0 0 0 0 Updated Oct 16, 2024
  • seq_cleaner Public

    Repo for a simple sequence cleaner. Removes host data, and filters for low-quality reads

    ParkinsonLab/seq_cleaner’s past year of commit activity
    Python 0 0 0 0 Updated Sep 16, 2024
  • MetaPro Public
    ParkinsonLab/MetaPro’s past year of commit activity
    Python 18 GPL-3.0 4 4 0 Updated Aug 20, 2024
  • HiTaxon Public

    A hierarchical ensemble framework for taxonomic classification of short reads

    ParkinsonLab/HiTaxon’s past year of commit activity
    Python 1 0 0 0 Updated May 20, 2024
  • MetaPro_tutorial Public

    Microbiome tutorial, running on MetaPro

    ParkinsonLab/MetaPro_tutorial’s past year of commit activity
    2 2 0 0 Updated May 6, 2024
  • PathwayCompleteness Public
    ParkinsonLab/PathwayCompleteness’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 26, 2024
  • cell4d Public

    Repository for Cell4D

    ParkinsonLab/cell4d’s past year of commit activity
    C++ 0 0 0 0 Updated Feb 13, 2024
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