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Fixed TSEBRA failure issue #86

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Fixed TSEBRA failure issue

Fixed TSEBRA failure issue #86

Triggered via pull request December 5, 2024 00:11
@GallVpGallVp
opened #122
patch/121
Status Failure
Total duration 16m 56s
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ci.yml

on: pull_request
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4 errors and 65 warnings
tests/short/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
tests/minimal/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
tests/stub/main.nf.test docker NF-24.04.2
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
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ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/fastavalidator/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/custom/restoregffids/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
tests/short/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/gffcompare/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/tsebra/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/gunzip/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/samtools/cat/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/agat/spaddintrons/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/agat/convertspgxf2gxf/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/agat/spextractsequences/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/untar/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/agat/spflagshortintrons/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/custom/shortenfastaids/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/liftoff/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/gunzip/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/repeatmodeler/builddatabase/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/ltrharvest/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/agat/spfilterfeaturefromkilllist/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/repeatmodeler/repeatmodeler/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/seqkit/rmdup/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/umitools/extract/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/agat/convertspgff2gtf/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/gt/gff3/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/gffread/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/gffread/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/agat/spmergeannotations/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/sratools/prefetch/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/cat/cat/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/cat/cat/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/diamond/makedb/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/sratools/fasterqdump/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/gallvp/gxf_fasta_agat_spaddintrons_spextractsequences/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/orthofinder/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/sortmerna/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/multiqc/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/ltrfinder/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/eggnogmapper/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/cat/fastq/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/busco/generateplot/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/repeatmasker/repeatmasker/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/local/fasta_liftoff/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/custom/rmouttogff3/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/fastqc/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/fastp/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/gallvp/fasta_gxf_busco_plot/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/ltrretriever/lai/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/braker3/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/ltrretriever/ltrretriever/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/busco/busco/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/nf-core/star/align/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
tests/minimal/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
modules/gallvp/edta/edta/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
tests/stub/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
subworkflows/gallvp/fasta_edta_lai/tests/main.nf.test docker NF-24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
confirm-pass
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