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Add gffread EXTRACT_CDNA and EXTRACT_CDS feature to outputs #91

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Add gffread EXTRACT_CDNA and EXTRACT_CDS feature to outputs

Add gffread EXTRACT_CDNA and EXTRACT_CDS feature to outputs #91

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Job Run time
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15s
modules/nf-core/star/genomegenerate/tests/main.nf.test docker NF-24.04.2
1m 0s
tests/minimal/main.nf.test docker NF-24.04.2
1m 50s
modules/nf-core/fastp/tests/main.nf.test docker NF-24.04.2
1m 51s
modules/nf-core/cat/fastq/tests/main.nf.test docker NF-24.04.2
1m 41s
modules/nf-core/seqkit/rmdup/tests/main.nf.test docker NF-24.04.2
1m 16s
subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-24.04.2
46s
subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test docker NF-24.04.2
1m 14s
modules/nf-core/untar/tests/main.nf.test docker NF-24.04.2
49s
subworkflows/gallvp/fasta_gxf_busco_plot/tests/main.nf.test docker NF-24.04.2
1m 51s
modules/nf-core/cat/cat/tests/main.nf.test docker NF-24.04.2
1m 6s
modules/nf-core/sratools/prefetch/tests/main.nf.test docker NF-24.04.2
50s
modules/gallvp/edta/edta/tests/main.nf.test docker NF-24.04.2
1m 53s
modules/nf-core/sratools/fasterqdump/tests/main.nf.test docker NF-24.04.2
1m 18s
modules/nf-core/gunzip/tests/main.nf.test docker NF-24.04.2
55s
subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-24.04.2
1m 50s
modules/gallvp/busco/generateplot/tests/main.nf.test docker NF-24.04.2
1m 36s
subworkflows/gallvp/gxf_fasta_agat_spaddintrons_spextractsequences/tests/main.nf.test docker NF-24.04.2
1m 14s
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test docker NF-24.04.2
30s
modules/gallvp/custom/restoregffids/tests/main.nf.test docker NF-24.04.2
37s
modules/nf-core/agat/convertspgxf2gxf/tests/main.nf.test docker NF-24.04.2
56s
tests/stub/main.nf.test docker NF-24.04.2
1m 47s
modules/gallvp/repeatmasker/repeatmasker/tests/main.nf.test docker NF-24.04.2
1m 53s
modules/gallvp/busco/busco/tests/main.nf.test docker NF-24.04.2
1m 55s
modules/nf-core/samtools/cat/tests/main.nf.test docker NF-24.04.2
40s
modules/nf-core/gffread/tests/main.nf.test docker NF-24.04.2
1m 11s
modules/nf-core/repeatmodeler/repeatmodeler/tests/main.nf.test docker NF-24.04.2
1m 10s
modules/gallvp/custom/rmouttogff3/tests/main.nf.test docker NF-24.04.2
1m 43s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-24.04.2
48s
modules/gallvp/agat/spaddintrons/tests/main.nf.test docker NF-24.04.2
1m 19s
modules/gallvp/ltrharvest/tests/main.nf.test docker NF-24.04.2
1m 13s
modules/nf-core/tsebra/tests/main.nf.test docker NF-24.04.2
45s
modules/nf-core/sortmerna/tests/main.nf.test docker NF-24.04.2
1m 25s
tests/short/main.nf.test docker NF-24.04.2
33s
modules/gallvp/cat/cat/tests/main.nf.test docker NF-24.04.2
1m 9s
modules/gallvp/ltrfinder/tests/main.nf.test docker NF-24.04.2
1m 37s
modules/gallvp/gunzip/tests/main.nf.test docker NF-24.04.2
55s
modules/nf-core/star/align/tests/main.nf.test docker NF-24.04.2
1m 52s
modules/gallvp/custom/shortenfastaids/tests/main.nf.test docker NF-24.04.2
58s
modules/nf-core/gt/gff3/tests/main.nf.test docker NF-24.04.2
44s
modules/gallvp/ltrretriever/lai/tests/main.nf.test docker NF-24.04.2
1m 54s
modules/nf-core/fastavalidator/tests/main.nf.test docker NF-24.04.2
43s
modules/gallvp/gffread/tests/main.nf.test docker NF-24.04.2
1m 17s
modules/nf-core/multiqc/tests/main.nf.test docker NF-24.04.2
1m 21s
modules/nf-core/repeatmodeler/builddatabase/tests/main.nf.test docker NF-24.04.2
57s
modules/nf-core/agat/spfilterfeaturefromkilllist/tests/main.nf.test docker NF-24.04.2
1m 4s
modules/nf-core/diamond/makedb/tests/main.nf.test docker NF-24.04.2
47s
subworkflows/gallvp/fasta_edta_lai/tests/main.nf.test docker NF-24.04.2
1m 49s
modules/nf-core/gffcompare/tests/main.nf.test docker NF-24.04.2
39s
modules/nf-core/agat/convertspgff2gtf/tests/main.nf.test docker NF-24.04.2
57s
modules/gallvp/agat/spextractsequences/tests/main.nf.test docker NF-24.04.2
58s
modules/nf-core/eggnogmapper/tests/main.nf.test docker NF-24.04.2
1m 33s
modules/gallvp/agat/spflagshortintrons/tests/main.nf.test docker NF-24.04.2
56s
modules/gallvp/braker3/tests/main.nf.test docker NF-24.04.2
1m 55s
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-24.04.2
45s
modules/nf-core/umitools/extract/tests/main.nf.test docker NF-24.04.2
1m 7s
modules/nf-core/orthofinder/tests/main.nf.test docker NF-24.04.2
1m 27s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-24.04.2
21s
modules/gallvp/ltrretriever/ltrretriever/tests/main.nf.test docker NF-24.04.2
1m 56s
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-24.04.2
1m 4s
modules/nf-core/liftoff/tests/main.nf.test docker NF-24.04.2
59s
modules/nf-core/fastqc/tests/main.nf.test docker NF-24.04.2
1m 52s
modules/nf-core/agat/spmergeannotations/tests/main.nf.test docker NF-24.04.2
1m 19s
confirm-pass
1s
1h 16m 36s