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Fixed issues in genepal-report #126

Merged
merged 1 commit into from
Dec 10, 2024
Merged

Fixed issues in genepal-report #126

merged 1 commit into from
Dec 10, 2024

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GallVp
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@GallVp GallVp commented Dec 10, 2024

PR checklist

  • Fixed issues in genepal-report
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@GallVp GallVp added this to the 0.6.0 milestone Dec 10, 2024
This was linked to issues Dec 10, 2024
Pipeline report module gets killed due to Out of Memory on SLURM #123
Open
Pipeline report fails with large heatmaps #124
Open
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github-actions bot commented Dec 10, 2024 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit b9b7d37

+| ✅ 104 tests passed       |+
#| ❔  18 tests were ignored |#
!| ❗   4 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: conf/igenomes.config
  • files_exist - File not found: conf/igenomes_ignored.config
  • files_exist - File not found: .github/workflows/awstest.yml
  • files_exist - File not found: .github/workflows/awsfulltest.yml

❔ Tests ignored:

  • files_exist - File is ignored: CODE_OF_CONDUCT.md
  • files_exist - File is ignored: .github/ISSUE_TEMPLATE/config.yml
  • files_exist - File is ignored: assets/nf-core-genepal_logo_light.png
  • files_exist - File is ignored: docs/images/nf-core-genepal_logo_light.png
  • files_exist - File is ignored: docs/images/nf-core-genepal_logo_dark.png
  • nextflow_config - nextflow_config
  • files_unchanged - File does not exist: CODE_OF_CONDUCT.md
  • files_unchanged - File ignored due to lint config: LICENSE or LICENSE.md or LICENCE or LICENCE.md
  • files_unchanged - File does not exist: .github/ISSUE_TEMPLATE/config.yml
  • files_unchanged - File ignored due to lint config: .github/workflows/branch.yml
  • files_unchanged - File ignored due to lint config: .github/workflows/linting.yml
  • files_unchanged - File does not exist: assets/nf-core-genepal_logo_light.png
  • files_unchanged - File does not exist: docs/images/nf-core-genepal_logo_light.png
  • files_unchanged - File does not exist: docs/images/nf-core-genepal_logo_dark.png
  • files_unchanged - File ignored due to lint config: docs/README.md
  • files_unchanged - File ignored due to lint config: .gitignore or .prettierignore
  • actions_ci - actions_ci
  • actions_awstest - 'awstest.yml' workflow not found: /home/runner/work/genepal/genepal/.github/workflows/awstest.yml

✅ Tests passed:

Run details

  • nf-core/tools version 3.0.2
  • Run at 2024-12-10 02:44:00

@GallVp GallVp merged commit 496ff62 into dev Dec 10, 2024
7 checks passed
@GallVp GallVp deleted the patch/124 branch December 10, 2024 03:08
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Pipeline report fails with large heatmaps Pipeline report module gets killed due to Out of Memory on SLURM
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