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Run pqsql with db owner not postgres
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@amandine-sahl
amandine-sahl committed Oct 17, 2024
1 parent 2134315 commit 8c89df0
Showing 1 changed file with 27 additions and 71 deletions.
98 changes: 27 additions & 71 deletions install_db.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -337,68 +337,33 @@ if ! database_exists $db_name
done

sudo sed -i "s/INSERT_ALTITUDE/${insert}/" /tmp/atlas/4.atlas.vm_altitudes.sql

echo "[$(date +'%H:%M:%S')] Creating atlas.vm_taxref..."
time_temp=$SECONDS
export PGPASSWORD=$owner_atlas_pass;psql -d $db_name -U $owner_atlas -h $db_host -p $db_port -f /tmp/atlas/1.atlas.vm_taxref.sql &>> log/install_db.log
echo "[$(date +'%H:%M:%S')] Passed - Duration : $((($SECONDS-$time_temp)/60))m$((($SECONDS-$time_temp)%60))s"

echo "[$(date +'%H:%M:%S')] Creating atlas.vm_observations..."
time_temp=$SECONDS
export PGPASSWORD=$owner_atlas_pass;psql -d $db_name -U $owner_atlas -h $db_host -p $db_port -f /tmp/atlas/2.atlas.vm_observations.sql &>> log/install_db.log
echo "[$(date +'%H:%M:%S')] Passed - Duration : $((($SECONDS-$time_temp)/60))m$((($SECONDS-$time_temp)%60))s"

echo "[$(date +'%H:%M:%S')] Creating atlas.vm_taxons..."
time_temp=$SECONDS
export PGPASSWORD=$owner_atlas_pass;psql -d $db_name -U $owner_atlas -h $db_host -p $db_port -f /tmp/atlas/3.atlas.vm_taxons.sql &>> log/install_db.log
echo "[$(date +'%H:%M:%S')] Passed - Duration : $((($SECONDS-$time_temp)/60))m$((($SECONDS-$time_temp)%60))s"

echo "[$(date +'%H:%M:%S')] Creating atlas.vm_altitudes..."
time_temp=$SECONDS
export PGPASSWORD=$owner_atlas_pass;psql -d $db_name -U $owner_atlas -h $db_host -p $db_port -f /tmp/atlas/4.atlas.vm_altitudes.sql &>> log/install_db.log
echo "[$(date +'%H:%M:%S')] Passed - Duration : $((($SECONDS-$time_temp)/60))m$((($SECONDS-$time_temp)%60))s"

echo "[$(date +'%H:%M:%S')] Creating atlas.vm_search_taxon..."
time_temp=$SECONDS
export PGPASSWORD=$owner_atlas_pass;psql -d $db_name -U $owner_atlas -h $db_host -p $db_port -f /tmp/atlas/5.atlas.vm_search_taxon.sql &>> log/install_db.log
echo "[$(date +'%H:%M:%S')] Passed - Duration : $((($SECONDS-$time_temp)/60))m$((($SECONDS-$time_temp)%60))s"

echo "[$(date +'%H:%M:%S')] Creating atlas.vm_mois..."
time_temp=$SECONDS
export PGPASSWORD=$owner_atlas_pass;psql -d $db_name -U $owner_atlas -h $db_host -p $db_port -f /tmp/atlas/6.atlas.vm_mois.sql &>> log/install_db.log
echo "[$(date +'%H:%M:%S')] Passed - Duration : $((($SECONDS-$time_temp)/60))m$((($SECONDS-$time_temp)%60))s"

echo "[$(date +'%H:%M:%S')] Creating atlas.vm_communes..."
time_temp=$SECONDS
export PGPASSWORD=$owner_atlas_pass;psql -d $db_name -U $owner_atlas -h $db_host -p $db_port -f /tmp/atlas/7.atlas.vm_communes.sql &>> log/install_db.log
echo "[$(date +'%H:%M:%S')] Passed - Duration : $((($SECONDS-$time_temp)/60))m$((($SECONDS-$time_temp)%60))s"

echo "[$(date +'%H:%M:%S')] Creating atlas.vm_medias"
time_temp=$SECONDS
export PGPASSWORD=$owner_atlas_pass;psql -d $db_name -U $owner_atlas -h $db_host -p $db_port -f /tmp/atlas/8.atlas.vm_medias.sql &>> log/install_db.log
echo "[$(date +'%H:%M:%S')] Passed - Duration : $((($SECONDS-$time_temp)/60))m$((($SECONDS-$time_temp)%60))s"

echo "[$(date +'%H:%M:%S')] Creating atlas.vm_cor_taxon_attribut..."
time_temp=$SECONDS
sudo sed -i "s/WHERE id_attribut IN (100, 101, 102, 103);$/WHERE id_attribut IN ($attr_desc, $attr_commentaire, $attr_milieu, $attr_chorologie);/" /tmp/atlas/9.atlas.vm_cor_taxon_attribut.sql
export PGPASSWORD=$owner_atlas_pass;psql -d $db_name -U $owner_atlas -h $db_host -p $db_port -f /tmp/atlas/9.atlas.vm_cor_taxon_attribut.sql &>> log/install_db.log
echo "[$(date +'%H:%M:%S')] Passed - Duration : $((($SECONDS-$time_temp)/60))m$((($SECONDS-$time_temp)%60))s"

echo "[$(date +'%H:%M:%S')] Creating atlas.vm_taxons_plus_observes..."
time_temp=$SECONDS
export PGPASSWORD=$owner_atlas_pass;psql -d $db_name -U $owner_atlas -h $db_host -p $db_port -f /tmp/atlas/10.atlas.vm_taxons_plus_observes.sql &>> log/install_db.log
echo "[$(date +'%H:%M:%S')] Passed - Duration : $((($SECONDS-$time_temp)/60))m$((($SECONDS-$time_temp)%60))s"

echo "[$(date +'%H:%M:%S')] Creating atlas.vm_cor_taxon_organism..."
time_temp=$SECONDS
export PGPASSWORD=$owner_atlas_pass;psql -d $db_name -U $owner_atlas -h $db_host -p $db_port -f /tmp/atlas/11.atlas.vm_cor_taxon_organism.sql &>> log/install_db.log
echo "[$(date +'%H:%M:%S')] Passed - Duration : $((($SECONDS-$time_temp)/60))m$((($SECONDS-$time_temp)%60))s"

echo "[$(date +'%H:%M:%S')] Creating function refresh vm..."
time_temp=$SECONDS
export PGPASSWORD=$owner_atlas_pass;psql -d $db_name -U $owner_atlas -h $db_host -p $db_port -f /tmp/atlas/atlas.refresh_materialized_view_data.sql &>> log/install_db.log
echo "[$(date +'%H:%M:%S')] Passed - Duration : $((($SECONDS-$time_temp)/60))m$((($SECONDS-$time_temp)%60))s"



# FR: Execution des scripts sql de création des vm de l'atlas
# EN: Run sql scripts : build atlas vm
scripts_sql=(
"1.atlas.vm_taxref.sql"
"2.atlas.vm_observations.sql"
"3.atlas.vm_taxons.sql"
"4.atlas.vm_altitudes.sql"
"5.atlas.vm_search_taxon.sql"
"6.atlas.vm_mois.sql"
"7.atlas.vm_communes.sql"
"8.atlas.vm_medias.sql"
"9.atlas.vm_cor_taxon_attribut.sql"
"10.atlas.vm_taxons_plus_observes.sql"
"11.atlas.vm_cor_taxon_organism.sql"
"atlas.refresh_materialized_view_data.sql"
)
for script in "${scripts_sql[@]}"
do
echo "[$(date +'%H:%M:%S')] Creating ${script}..."
time_temp=$SECONDS
export PGPASSWORD=$owner_atlas_pass;psql -d $db_name -U $owner_atlas -h $db_host -p $db_port -f /tmp/atlas/${script} &>> log/install_db.log
echo "[$(date +'%H:%M:%S')] Passed - Duration : $((($SECONDS-$time_temp)/60))m$((($SECONDS-$time_temp)%60))s"
done

if $use_ref_geo_gn2
then
echo "[$(date +'%H:%M:%S')] Creating atlas.t_mailles_territoire..."
Expand All @@ -414,16 +379,7 @@ if ! database_exists $db_name
time_temp=$SECONDS
export PGPASSWORD=$owner_atlas_pass;psql -d $db_name -U $owner_atlas -h $db_host -p $db_port -f /tmp/atlas/13.atlas.vm_observations_mailles.sql &>> log/install_db.log
echo "[$(date +'%H:%M:%S')] Passed - Duration : $((($SECONDS-$time_temp)/60))m$((($SECONDS-$time_temp)%60))s"

sudo -u postgres -s psql -d $db_name -c "ALTER TABLE atlas.bib_taxref_rangs OWNER TO "$owner_atlas";"
sudo -u postgres -s psql -d $db_name -c "ALTER TABLE atlas.bib_taxref_rangs OWNER TO "$owner_atlas";"
sudo -u postgres -s psql -d $db_name -c "ALTER FUNCTION atlas.create_vm_altitudes() OWNER TO "$owner_atlas";"
sudo -u postgres -s psql -d $db_name -c "ALTER FUNCTION atlas.find_all_taxons_childs(integer) OWNER TO "$owner_atlas";"
sudo -u postgres -s psql -d $db_name -c "ALTER TABLE atlas.t_mailles_territoire OWNER TO "$owner_atlas";"
sudo -u postgres -s psql -d $db_name -c "ALTER TABLE atlas.vm_observations_mailles OWNER TO "$owner_atlas";"
sudo -u postgres -s psql -d $db_name -c "ALTER TABLE atlas.vm_cor_taxon_organism OWNER TO "$owner_atlas";"



# FR: Affectation de droits en lecture sur les VM à l'utilisateur de l'application ($user_pg)
# EN: Assign read rights on VMs to the application user ($user_pg)
echo "Grant..."
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