Merge branch 'devel' of https://github.com/PrincetonUniversity/PsyNeu… #9784
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: PsyNeuLink CI | |
| on: | |
| schedule: | |
| - cron: "22 2 * * *" | |
| push: | |
| branches-ignore: | |
| - 'dependabot/**' | |
| paths-ignore: | |
| - 'docs/**' | |
| - 'doc_requirements.txt' | |
| tags-ignore: | |
| - 'v**' | |
| pull_request: | |
| # run only the latest instance of this workflow job for the current branch/PR | |
| # cancel older runs | |
| # fall back to run id if not available (run id is unique -> no cancellations) | |
| concurrency: | |
| group: ci-${{ github.ref || github.run_id }}-${{ github.workflow }} | |
| cancel-in-progress: true | |
| jobs: | |
| # The main test job | |
| build: | |
| runs-on: ${{ (contains(vars.SELF_HOSTED, format(';{0}_{1}_{2}_{3};', matrix.os, matrix.python-version, matrix.python-architecture, matrix.extra-args)) | |
| && fromJSON(format('[ "self-hosted","{0}", "X64", "enabled" ]', matrix.os == 'ubuntu' && 'Linux' || matrix.os))) | |
| || format('{0}-latest', matrix.os) }} | |
| env: | |
| # Keep DESCRIPTION in sync with the above | |
| DESCRIPTION: ${{ format(';{0}_{1}_{2}_{3};', matrix.os, matrix.python-version, matrix.python-architecture, matrix.extra-args) }} | |
| SELF_HOSTED: ${{ vars.SELF_HOSTED }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.7', '3.11', '3.12'] | |
| python-architecture: ['x64'] | |
| extra-args: [''] | |
| os: [ubuntu, macos, windows] | |
| version-restrict: [''] | |
| include: | |
| # code-coverage build on macos python 3.9 | |
| - python-version: '3.9' | |
| os: macos | |
| extra-args: '--cov=psyneulink' | |
| # --forked run of python only tests | |
| # Python tests are enough to test potential naming issues | |
| - python-version: '3.9' | |
| os: ubuntu | |
| extra-args: '--forked -m "not llvm"' | |
| # add 32-bit build on windows | |
| - python-version: '3.8' | |
| python-architecture: 'x86' | |
| os: windows | |
| # fp32 run on linux python 3.10 | |
| - python-version: '3.10' | |
| os: ubuntu | |
| extra-args: '--fp-precision=fp32' | |
| # --benchmark-enable run on macos python 3.10 | |
| - python-version: '3.10' | |
| os: macos | |
| # pytest needs both '--benchmark-only' and '-m benchmark' | |
| # The former fails the test if benchmarks cannot be enabled | |
| # (e.g. due to --dist setting) | |
| # The latter works around a crash in pytest when collecting tests: | |
| # https://github.com/ionelmc/pytest-benchmark/issues/243 | |
| extra-args: '-m benchmark --benchmark-enable --benchmark-only --benchmark-min-rounds=2 --benchmark-max-time=0.001 --benchmark-warmup=off -n0 --dist=no' | |
| # add python 3.7 with deps restricted to min supported version | |
| - python-version: '3.7' | |
| python-architecture: 'x64' | |
| os: ubuntu | |
| version-restrict: 'min' | |
| # add python 3.8 build on macos since 3.7 is broken | |
| # https://github.com/actions/virtual-environments/issues/4230 | |
| # use default python-architecture | |
| - python-version: '3.8' | |
| os: macos | |
| exclude: | |
| # 3.7 is broken on macos-11, | |
| # https://github.com/actions/virtual-environments/issues/4230 | |
| - python-version: '3.7' | |
| os: macos | |
| steps: | |
| # increased fetch-depth and tag checkout needed to get correct | |
| # version string from versioneer (must have history to a prior tag); | |
| # otherwise install fails due to circular dependency with modeci_mdf | |
| - name: Checkout sources | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 200 | |
| # fetch only master to avoid getting unneeded branches with | |
| # characters invalid on windows | |
| - name: Checkout tags | |
| run: git fetch --tags origin master | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| architecture: ${{ matrix.python-architecture }} | |
| - name: Restrict version of direct dependencies | |
| if: ${{ matrix.version-restrict == 'min' }} | |
| shell: bash | |
| run: | | |
| sed -i '/^[^#]/s/>=/==/' *requirements.txt | |
| git config user.name "github actions" | |
| git config user.email "none" | |
| git commit -a -m "Restrict version of direct dependencies to min" | |
| - name: Get pip cache location | |
| shell: bash | |
| id: pip_cache | |
| run: | | |
| python -m pip install -U pip | |
| python -m pip --version | |
| echo "pip_cache_dir=$(python -m pip cache dir)" | tee -a $GITHUB_OUTPUT | |
| - name: Wheels cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ steps.pip_cache.outputs.pip_cache_dir }}/wheels | |
| key: ${{ runner.os }}-python-${{ matrix.python-version }}-${{ matrix.python-architecture }}-pip-wheels-${{ hashFiles('requirements.txt', 'dev_requirements.txt') }}-${{ github.sha }} | |
| restore-keys: ${{ runner.os }}-python-${{ matrix.python-version }}-${{ matrix.python-architecture }}-pip-wheels-${{ hashFiles('requirements.txt', 'dev_requirements.txt') }} | |
| - name: Install PNL package | |
| uses: ./.github/actions/install-pnl | |
| id: install | |
| with: | |
| features: 'dev' | |
| - name: Lint with flake8 | |
| shell: bash | |
| run: | | |
| pip install flake8 | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --exit-zero --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Print numpy info | |
| shell: bash | |
| run: | | |
| python -c "import numpy; numpy.show_config()" | |
| - name: Print machine info | |
| shell: bash | |
| run: | | |
| case "$RUNNER_OS" in | |
| Linux*) lscpu; lsmem;; | |
| macOS*) sysctl -a | grep '^hw' ;; | |
| Windows*) wmic cpu get description,currentclockspeed,NumberOfCores,NumberOfEnabledCore,NumberOfLogicalProcessors; wmic memorychip get capacity,speed,status,manufacturer ;; | |
| esac | |
| - name: Test with pytest | |
| timeout-minutes: 180 | |
| run: pytest --junit-xml=tests_out.xml --verbosity=0 -n logical ${{ matrix.extra-args }} | |
| - name: Upload test results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-results-${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.python-architecture }}-${{ matrix.version-restrict }} | |
| path: tests_out.xml | |
| retention-days: 5 | |
| if: (success() || failure()) && ! contains(matrix.extra-args, 'forked') | |
| - name: Upload coveralls code coverage | |
| if: contains(matrix.extra-args, '--cov=psyneulink') | |
| shell: bash | |
| env: | |
| COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }} | |
| run: | | |
| if [ -n "$COVERALLS_REPO_TOKEN" ]; then | |
| pip install coveralls | |
| coveralls | |
| else | |
| echo "::warning::Not uploading to coveralls.io, token not available!" | |
| fi | |
| - name: Upload dist packages | |
| uses: actions/upload-artifact@v4 | |
| if: matrix.version-restrict == '' | |
| with: | |
| name: dist-${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.python-architecture }} | |
| path: ${{ steps.install.outputs.wheel }} ${{ steps.install.outputs.sdist }} | |
| retention-days: 2 |