Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

1587 add regularizer demo #1589

Merged
merged 7 commits into from
Dec 27, 2023
Merged
Show file tree
Hide file tree
Changes from 5 commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 2 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -237,6 +237,8 @@ Tutorial that demonstrates how monai `SlidingWindowInferer` can be used when a 3
This tutorial uses the MedNIST hand CT scan dataset to demonstrate MONAI's autoencoder class. The autoencoder is used with an identity encode/decode (i.e., what you put in is what you should get back), as well as demonstrating its usage for de-blurring and de-noising.
##### [batch_output_transform](./modules/batch_output_transform.ipynb)
Tutorial to explain and show how to set `batch_transform` and `output_transform` of handlers to work with MONAI engines.
##### [bending_energy_diffusion_loss_notes](./modules/bending_energy_diffusion_loss_notes.ipynb)
This notebook demonstrates when and how to compute normalized bending energy and diffusion loss.
##### [compute_metric](./modules/compute_metric.py)
Example shows how to compute metrics from saved predictions and labels with PyTorch multi-processing support.
##### [csv_datasets](./modules/csv_datasets.ipynb)
Expand Down
646 changes: 646 additions & 0 deletions modules/bending_energy_diffusion_loss_notes.ipynb

Large diffs are not rendered by default.

1 change: 1 addition & 0 deletions runner.sh
Original file line number Diff line number Diff line change
Expand Up @@ -76,6 +76,7 @@ doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" 01_bundle_intro.ipy
doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" 02_mednist_classification.ipynb)
doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" 03_mednist_classification_v2.ipynb)
doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" 04_integrating_code.ipynb)
doesnt_contain_max_epochs=("${doesnt_contain_max_epochs[@]}" bending_energy_diffusion_loss_notes.ipynb)

# Execution of the notebook in these folders / with the filename cannot be automated
skip_run_papermill=()
Expand Down