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Update r-cmd-check.yml
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bms63 authored Feb 29, 2024
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Showing 1 changed file with 22 additions and 59 deletions.
81 changes: 22 additions & 59 deletions .github/workflows/r-cmd-check.yml
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# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
#
# NOTE: This workflow is overkill for most R packages and
# check-standard.yaml is likely a better choice.
# usethis::use_github_action("check-standard") will install it.
on:
push:
branches:
- main
- devel
branches: [main, master]
pull_request:
branches:
- main
- devel
branches: [main, master]

name: R CMD Check
name: R-CMD-check

jobs:
R-CMD-check:
Expand All @@ -22,66 +22,29 @@ jobs:
fail-fast: false
matrix:
config:
- {os: windows-latest, r: '4.2', repos: 'https://packagemanager.posit.co/cran/2022-12-14/'}
- {os: ubuntu-20.04, r: '4.2', repos: 'https://packagemanager.posit.co/cran/2022-12-14/'}

# use 4.1 to check with rtools40's older compiler
- {os: windows-latest, r: '4.2'}
- {os: ubuntu-latest, r: 'release'}
env:
REPOS: ${{ matrix.config.repos }}
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes

steps:
- uses: actions/checkout@v3

- uses: r-lib/actions/setup-pandoc@v2

- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true

- uses: r-lib/actions/setup-pandoc@v2

- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
shell: Rscript {0}

- name: Restore R package cache
if: runner.os != 'Windows'
uses: actions/cache@v2
- uses: r-lib/actions/setup-r-dependencies@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

- name: Install system dependencies
if: runner.os == 'Linux'
run: |
while read -r cmd
do
eval sudo $cmd
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
- name: Install dependencies
run: |
repos <- Sys.getenv("REPOS")
if (repos != "") options(repos = repos)
remotes::install_deps(dependencies = TRUE)
remotes::install_cran("rcmdcheck")
devtools::install_github("pharmaverse/envsetup")
shell: Rscript {0}

- name: Check
env:
_R_CHECK_CRAN_INCOMING_REMOTE_: false
run: |
options(crayon.enabled = TRUE)
rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
shell: Rscript {0}
extra-packages: any::rcmdcheck
needs: check

- name: Upload check results
if: failure()
uses: actions/upload-artifact@main
- uses: r-lib/actions/check-r-package@v2
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check
upload-snapshots: true

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