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fix help text
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zargham-ahmad committed Jan 24, 2024
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Showing 1 changed file with 4 additions and 3 deletions.
7 changes: 4 additions & 3 deletions tools/recetox_msfinder/macros.xml
Original file line number Diff line number Diff line change
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<option value="Ppm">Ppm</option>
</param>
<param type="integer" value="-1" name="StructurePredictionTimeOut" label="StructurePredictionTimeOut" help="Time out parameter, value of -1 means no timeout" />
<param name="LewisAndSeniorCheck" type="boolean" checked="True" truevalue="True" falsevalue="False" label="LEWIS and SENIOR rules check" help="For an explanation of those rules see 'Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry'"
help="Generate formula candidates that match the valence rules of formula elements." />
<param name="LewisAndSeniorCheck" type="boolean" checked="True" truevalue="True" falsevalue="False" label="LEWIS and SENIOR rules check"
help="Generate formula candidates that match the valence rules of formula elements. For an explanation of those rules see 'Seven Golden Rules for heuristic
filtering of molecular formulas obtained by accurate mass spectrometry'" />
<param name="element_ratio_check" type="select" value="CommonRange=TRUE" label="element ratio check."
help="Generate formula candidates that satisfy every element ratios (ex. H/C ratio should be between 0 and 3.33 for Common range (99.7%) restriction.)">
<option value="CommonRange=TRUE" selected="true">Common Range</option>
<option value="ExtendedRange=TRUE">Extended Range</option>
<option value="ExtremeRange=TRUE">No restriction</option>
</param>
<param type="integer" value="2" min="1" max="3" name="TreeDepth" label="Tree Depth"
help="The limitation of in silico cleavages, i.e. if the user sets '2', the MS-FINDER program generates the fragments until product ions of a product ion."/>
help="The limitation of in silico cleavages, i.e. if the user sets '2', the MS-FINDER program generates fragments up to the second level of product ions."/>
<param type="integer" value="20" min="0" max="100" name="IsotopicAbundanceTolerance" label="Isotopic Ratio Tolerance"
help="Calculate the isotopic score. The tolerance should be utilized as the sigma value for the Gaussian scoring."/>
<param name="ElementProbabilityCheck" type="boolean" checked="True" truevalue="True" falsevalue="False" label="Element probability check"
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