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chore: sync main to dev #77

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merged 3 commits into from
Apr 3, 2024
Merged

chore: sync main to dev #77

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6d0c192
fix: don't replace NA name values when reading BED file
florianzwagemaker Apr 3, 2024
6bdd4bc
chore(main): release 1.3.1
ids-bioinformatics Apr 3, 2024
b24a48a
Merge pull request #76 from RIVM-bioinformatics/release-please--branc…
florianzwagemaker Apr 3, 2024
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3 changes: 1 addition & 2 deletions AmpliGone/AmpliGone.py
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Expand Up @@ -4,7 +4,6 @@
https://github.com/RIVM-bioinformatics/AmpliGone
"""


import argparse
import concurrent.futures as cf
import multiprocessing
Expand Down Expand Up @@ -75,7 +74,7 @@ def check_file_exists(fname):
Returns
-------
The name of the file to be read.

"""
if os.path.isfile(fname):
return fname
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1 change: 1 addition & 0 deletions AmpliGone/io_ops.py
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Expand Up @@ -152,6 +152,7 @@ def read_bed(filename):
score=str,
strand=str,
),
keep_default_na=False,
)
primer_df = primer_df[
~(
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2 changes: 1 addition & 1 deletion AmpliGone/version.py
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@@ -1 +1 @@
__version__ = "1.3.0"
__version__ = "1.3.1"
7 changes: 7 additions & 0 deletions CHANGELOG.md
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@@ -1,5 +1,12 @@
# Changelog

## [1.3.1](https://github.com/RIVM-bioinformatics/AmpliGone/compare/v1.3.0...v1.3.1) (2024-04-03)


### Bug Fixes

* don't replace NA name values when reading BED file ([6d0c192](https://github.com/RIVM-bioinformatics/AmpliGone/commit/6d0c192a0b997d98778c2a2f0281e19208aedcac))

## [1.3.0](https://github.com/RIVM-bioinformatics/AmpliGone/compare/v1.2.1...v1.3.0) (2023-08-08)


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2 changes: 1 addition & 1 deletion CITATION.cff
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Expand Up @@ -15,7 +15,7 @@ authors:
Environment (RIVM)
orcid: 'https://orcid.org/0009-0002-6384-3446'
- name: "The RIVM-IDS Bioinformatics team"
version: 1.3.0 #x-release-please-version
version: 1.3.1 #x-release-please-version
doi: 10.5281/zenodo.7684307
identifiers:
- type: doi
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