test: fix unit test #13
Workflow file for this run
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# Testing for pipeline python wrapper and scripts used inside rules | |
name: Juno_assembly test | |
on: [push, pull_request] | |
jobs: | |
build: | |
runs-on: ${{ matrix.config.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- {os: ubuntu-latest} | |
name: Testing Apollo-variant-typing ${{ matrix.config.os }} | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v4 | |
- name: Set up mamba env | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: envs/apollo_variant_typing.yaml | |
- name: Conda list | |
shell: bash -l {0} | |
run: conda list | |
- name: Test AMR mutation parsing | |
shell: bash -l {0} | |
run: pytest -v tests/test_amr_mutation_parsing.py |