Merge pull request #46 from RIVM-bioinformatics/remove_intel_channel #271

	# Testing for pipeline python wrapper and scripts used inside rules

	name: Juno_typing test

	on: [push, pull_request]

	jobs:
	build:
	runs-on: ${{ matrix.config.os }}
	strategy:
	fail-fast: false
	matrix:
	config:
	- {os: ubuntu-20.04}
	- {os: ubuntu-latest}
	name: Testing Juno_typing ${{ matrix.config.os }}

	steps:
	- uses: actions/checkout@v2
	- uses: eWaterCycle/setup-singularity@v7
	with:
	singularity-version: 3.8.7
	- name: Install Conda environment with Micromamba
	uses: mamba-org/setup-micromamba@v1
	with:
	cache-downloads: true
	environment-file: envs/juno_typing.yaml
	channel-priority: flexible
	- name: Conda list
	shell: bash -l {0}
	run: conda list
	- name: Test the python wrapper using juno_typing.
	shell: bash -l {0}
	run: python ./tests/test_juno_typing.py
	- name: Test the scripts used in juno_typing.
	shell: bash -l {0}
	run: python ./tests/test_scripts_used_in_rules.py

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