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@RNA-FRETools

RNA-FRETools

Software tools for analyzing spectroscopic data, especially FRET, in the realm of structure, dynamics and function of ncRNAs
README.md

We are combining single-molecule FRET spectroscopy 🔬 with computational modeling 💻 to elucidate how RNA structure and dynamics conveys function.

Visit us at ➡️ rna-fretools.github.io/

Core developers

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  1. MASH-FRET MASH-FRET Public

    MATLAB package to analyze single-molecule FRET data

    MATLAB 8 2

  2. fretraj fretraj Public

    PyMOL plugin to calculate accessible contact volumes on PDB structures

    Python 9 2

  3. Lifefit Lifefit Public

    Analyze fluorescence lifetime and anisotropy decays.

    Python 7 3

  4. fretlabel fretlabel Public

    Nucleic acid labeling and all-atom MD simulations with explicit fluorophores

    Python 5 1

Repositories

Showing 10 of 12 repositories
  • PAMtools Public

    Helper functions for the PAM software

    RNA-FRETools/PAMtools’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 3, 2024
  • Lifefit Public

    Analyze fluorescence lifetime and anisotropy decays.

    RNA-FRETools/Lifefit’s past year of commit activity
    Python 7 MIT 3 0 0 Updated Nov 3, 2024
  • fretraj Public

    PyMOL plugin to calculate accessible contact volumes on PDB structures

    RNA-FRETools/fretraj’s past year of commit activity
    Python 9 GPL-3.0 2 2 1 Updated Oct 28, 2024
  • MASH-FRET Public

    MATLAB package to analyze single-molecule FRET data

    RNA-FRETools/MASH-FRET’s past year of commit activity
    MATLAB 8 GPL-3.0 2 6 (1 issue needs help) 0 Updated Oct 21, 2024
  • just-the-docs Public Forked from just-the-docs/just-the-docs

    A modern, high customizable, responsive Jekyll theme for documention with built-in search.

    RNA-FRETools/just-the-docs’s past year of commit activity
    CSS 0 MIT 3,725 0 1 Updated Aug 20, 2024
  • fretlabel Public

    Nucleic acid labeling and all-atom MD simulations with explicit fluorophores

    RNA-FRETools/fretlabel’s past year of commit activity
    Python 5 GPL-3.0 1 0 0 Updated Jul 14, 2024
  • Steffen-Bioinformatics-2021 Public

    Analysis of DNA hairpin dynamics with FRETraj

    RNA-FRETools/Steffen-Bioinformatics-2021’s past year of commit activity
    2 GPL-3.0 0 2 0 Updated Jul 14, 2024
  • rna-fretools.github.io Public

    Single-moecule imaging and computation with RNA

    RNA-FRETools/rna-fretools.github.io’s past year of commit activity
    1 1 0 0 Updated Jul 13, 2024
  • Steffen_NucleicAcidsResearch_2024 Public

    De novo models of a manganese riboswitch using Rosetta's FARFAR2

    RNA-FRETools/Steffen_NucleicAcidsResearch_2024’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 13, 2024
  • rosettascripts Public

    Setup and running scripts for RNA modeling with Rosetta

    RNA-FRETools/rosettascripts’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Apr 12, 2024
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