take out link site validity check

Rappsilber-Laboratory · Oct 4, 2024 · a9071eb · a9071eb
1 parent 16246e6
commit a9071eb
Show file tree

Hide file tree

Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/parser/MzIdParser.py b/parser/MzIdParser.py
@@ -551,10 +551,10 @@ def parse_peptides(self):
                                              f'crosslinks, including multiple looplinks in peptide not supported')
 
             # link site validity check
-            if link_site1 is not None and link_site1 < 0:
-                raise MzIdParseException(f'Link site for peptide {pep_id} is negative')
-            if link_site2 is not None and link_site2 < 0:
-                raise MzIdParseException(f'Link site for peptide {pep_id} is negative')
+            # if link_site1 is not None and link_site1 < 0:
+            #     raise MzIdParseException(f'Link site for peptide {pep_id} is negative')
+            # if link_site2 is not None and link_site2 < 0:
+            #     raise MzIdParseException(f'Link site for peptide {pep_id} is negative')
 
             peptide_data = {
                 'id': peptide_index,

diff --git a/setup.py b/setup.py
@@ -24,7 +24,7 @@ def get_version(rel_path):
 
 setup(
     name="xi-mzidentml-converter",
-    version="0.2.6a2",
+    version="0.2.6a3",
     description="xi-mzidentml-converter uses pyteomics (https://pyteomics.readthedocs.io/en/latest/index.html) to "
                 "parse mzIdentML files (v1.2.0) and extract crosslink information. Results are written to a "
                 "relational database (PostgreSQL or SQLite) using sqlalchemy.",