v0.2.2, add indexes to match pep1_id and pep2_id

Rappsilber-Laboratory · Jul 30, 2024 · dbdf5fb · dbdf5fb
1 parent 8045523
commit dbdf5fb
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/models/match.py b/models/match.py
@@ -13,8 +13,8 @@ class Match(Base):
     spectra_data_id: Mapped[int] = mapped_column(Integer, nullable=True)  # nullable for csv data
     multiple_spectra_identification_id: Mapped[str] = mapped_column(Integer, nullable=True)
     multiple_spectra_identification_pc: Mapped[str] = mapped_column(CHAR, nullable=True)
-    pep1_id: Mapped[int] = mapped_column(Integer, nullable=False)
-    pep2_id: Mapped[int] = mapped_column(Integer, nullable=True)
+    pep1_id: Mapped[int] = mapped_column(Integer, index=True, nullable=False)
+    pep2_id: Mapped[int] = mapped_column(Integer, index=True, nullable=True)
     charge_state: Mapped[int] = mapped_column(Integer, nullable=True)
     pass_threshold: Mapped[bool] = mapped_column(BOOLEAN, nullable=False)
     rank: Mapped[int] = mapped_column(Integer, nullable=False)

diff --git a/setup.py b/setup.py
@@ -24,7 +24,7 @@ def get_version(rel_path):
 
 setup(
     name="xi-mzidentml-converter",
-    version="0.2.1",
+    version="0.2.2",
     description="xi-mzidentml-converter uses pyteomics (https://pyteomics.readthedocs.io/en/latest/index.html) to "
                 "parse mzIdentML files (v1.2.0) and extract crosslink information. Results are written to a "
                 "relational database (PostgreSQL or SQLite) using sqlalchemy.",