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I've added support for server-side encryption (SSE). One can specify a SSE algorithm in the alfresco-global.properties by adding the property "aws.s3.sse" with the value either being nothing for no SSE (default), "AES256" for "Server-Side Encryption with Amazon S3-Managed Keys (SSE-S3, AES-256)" or "aws:kms" for "Server-Side Encryption with AWS KMS-Managed Keys (SSE-KMS)".