Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
RemiAllio authored Oct 1, 2021
1 parent 8984fd6 commit 53b8c55
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -519,7 +519,7 @@ Depending on the proximity of your reference, you can play with the following pa
## Using entrez-direct utilities

1. Install entrez-direct utilities (instructions [here](https://www.ncbi.nlm.nih.gov/books/NBK179288/), or using `conda -c bioconda entrez-direct`)
2. Use the following in a shell to batch download all mitochondrial genomes associated with Lepidoptera:
2. Use the following in a shell to batch download all mitochondrial genomes associated with Carnivora:
```sh
taxa=Carnivora
esearch -db nuccore -query "\"mitochondrion\"[All Fields] AND (\"${taxa}\"[Organism]) AND (refseq[filter] AND mitochondrion[filter] AND (\"12000\"[SLEN] : \"20000\"[SLEN]))" | efetch -format gbwithparts > reference.gb
Expand Down

0 comments on commit 53b8c55

Please sign in to comment.