update v1.3

RemiAllio · May 26, 2020 · bc31b48 · bc31b48
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commit bc31b48
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diff --git a/Bio/Align/Generic.pyc b/Bio/Align/Generic.pyc
diff --git a/Bio/Align/__init__.pyc b/Bio/Align/__init__.pyc
diff --git a/Bio/AlignIO/ClustalIO.pyc b/Bio/AlignIO/ClustalIO.pyc
diff --git a/Bio/AlignIO/EmbossIO.pyc b/Bio/AlignIO/EmbossIO.pyc
diff --git a/Bio/AlignIO/FastaIO.pyc b/Bio/AlignIO/FastaIO.pyc
diff --git a/Bio/AlignIO/Interfaces.pyc b/Bio/AlignIO/Interfaces.pyc
diff --git a/Bio/AlignIO/NexusIO.pyc b/Bio/AlignIO/NexusIO.pyc
diff --git a/Bio/AlignIO/PhylipIO.pyc b/Bio/AlignIO/PhylipIO.pyc
diff --git a/Bio/AlignIO/StockholmIO.pyc b/Bio/AlignIO/StockholmIO.pyc
diff --git a/Bio/AlignIO/__init__.pyc b/Bio/AlignIO/__init__.pyc
diff --git a/Bio/Alphabet/IUPAC.pyc b/Bio/Alphabet/IUPAC.pyc
diff --git a/Bio/Alphabet/__init__.pyc b/Bio/Alphabet/__init__.pyc
diff --git a/Bio/Application/__init__.pyc b/Bio/Application/__init__.pyc
diff --git a/Bio/Blast/NCBIStandalone.pyc b/Bio/Blast/NCBIStandalone.pyc
diff --git a/Bio/Blast/Record.pyc b/Bio/Blast/Record.pyc
diff --git a/Bio/Blast/__init__.pyc b/Bio/Blast/__init__.pyc
diff --git a/Bio/Data/CodonTable.pyc b/Bio/Data/CodonTable.pyc
diff --git a/Bio/Data/IUPACData.pyc b/Bio/Data/IUPACData.pyc
diff --git a/Bio/Data/SCOPData.pyc b/Bio/Data/SCOPData.pyc
diff --git a/Bio/Data/__init__.pyc b/Bio/Data/__init__.pyc
diff --git a/Bio/File.pyc b/Bio/File.pyc
diff --git a/Bio/GenBank/Scanner.pyc b/Bio/GenBank/Scanner.pyc
diff --git a/Bio/GenBank/__init__.pyc b/Bio/GenBank/__init__.pyc
diff --git a/Bio/GenBank/utils.pyc b/Bio/GenBank/utils.pyc
diff --git a/Bio/Nexus/Nexus.pyc b/Bio/Nexus/Nexus.pyc
diff --git a/Bio/Nexus/Nodes.pyc b/Bio/Nexus/Nodes.pyc
diff --git a/Bio/Nexus/Trees.pyc b/Bio/Nexus/Trees.pyc
diff --git a/Bio/Nexus/__init__.pyc b/Bio/Nexus/__init__.pyc
diff --git a/Bio/ParserSupport.pyc b/Bio/ParserSupport.pyc
diff --git a/Bio/SearchIO/BlastIO/__init__.pyc b/Bio/SearchIO/BlastIO/__init__.pyc
diff --git a/Bio/SearchIO/BlastIO/blast_tab.pyc b/Bio/SearchIO/BlastIO/blast_tab.pyc
diff --git a/Bio/SearchIO/BlastIO/blast_text.pyc b/Bio/SearchIO/BlastIO/blast_text.pyc
diff --git a/Bio/SearchIO/BlastIO/blast_xml.pyc b/Bio/SearchIO/BlastIO/blast_xml.pyc
diff --git a/Bio/SearchIO/__init__.pyc b/Bio/SearchIO/__init__.pyc
diff --git a/Bio/SearchIO/_index.pyc b/Bio/SearchIO/_index.pyc
diff --git a/Bio/SearchIO/_model/__init__.pyc b/Bio/SearchIO/_model/__init__.pyc
diff --git a/Bio/SearchIO/_model/_base.pyc b/Bio/SearchIO/_model/_base.pyc
diff --git a/Bio/SearchIO/_model/hit.pyc b/Bio/SearchIO/_model/hit.pyc
diff --git a/Bio/SearchIO/_model/hsp.pyc b/Bio/SearchIO/_model/hsp.pyc
diff --git a/Bio/SearchIO/_model/query.pyc b/Bio/SearchIO/_model/query.pyc
diff --git a/Bio/SearchIO/_utils.pyc b/Bio/SearchIO/_utils.pyc
diff --git a/Bio/Seq.pyc b/Bio/Seq.pyc
diff --git a/Bio/SeqFeature.pyc b/Bio/SeqFeature.pyc
diff --git a/Bio/SeqIO/AbiIO.pyc b/Bio/SeqIO/AbiIO.pyc
diff --git a/Bio/SeqIO/AceIO.pyc b/Bio/SeqIO/AceIO.pyc
diff --git a/Bio/SeqIO/FastaIO.pyc b/Bio/SeqIO/FastaIO.pyc
diff --git a/Bio/SeqIO/IgIO.pyc b/Bio/SeqIO/IgIO.pyc
diff --git a/Bio/SeqIO/InsdcIO.pyc b/Bio/SeqIO/InsdcIO.pyc
diff --git a/Bio/SeqIO/Interfaces.pyc b/Bio/SeqIO/Interfaces.pyc
diff --git a/Bio/SeqIO/PdbIO.pyc b/Bio/SeqIO/PdbIO.pyc
diff --git a/Bio/SeqIO/PhdIO.pyc b/Bio/SeqIO/PhdIO.pyc
diff --git a/Bio/SeqIO/PirIO.pyc b/Bio/SeqIO/PirIO.pyc
diff --git a/Bio/SeqIO/QualityIO.pyc b/Bio/SeqIO/QualityIO.pyc
diff --git a/Bio/SeqIO/SeqXmlIO.pyc b/Bio/SeqIO/SeqXmlIO.pyc
diff --git a/Bio/SeqIO/SffIO.pyc b/Bio/SeqIO/SffIO.pyc
diff --git a/Bio/SeqIO/SwissIO.pyc b/Bio/SeqIO/SwissIO.pyc
diff --git a/Bio/SeqIO/TabIO.pyc b/Bio/SeqIO/TabIO.pyc
diff --git a/Bio/SeqIO/UniprotIO.pyc b/Bio/SeqIO/UniprotIO.pyc
diff --git a/Bio/SeqIO/__init__.pyc b/Bio/SeqIO/__init__.pyc
diff --git a/Bio/SeqRecord.pyc b/Bio/SeqRecord.pyc
diff --git a/Bio/SeqUtils/__init__.pyc b/Bio/SeqUtils/__init__.pyc
diff --git a/Bio/Sequencing/Ace.pyc b/Bio/Sequencing/Ace.pyc
diff --git a/Bio/Sequencing/Phd.pyc b/Bio/Sequencing/Phd.pyc
diff --git a/Bio/Sequencing/__init__.pyc b/Bio/Sequencing/__init__.pyc
diff --git a/Bio/SwissProt/__init__.pyc b/Bio/SwissProt/__init__.pyc
diff --git a/Bio/__init__.pyc b/Bio/__init__.pyc
diff --git a/Bio/_py3k/__init__.pyc b/Bio/_py3k/__init__.pyc
diff --git a/Bio/_utils.pyc b/Bio/_utils.pyc
diff --git a/Bio/bgzf.pyc b/Bio/bgzf.pyc
diff --git a/FirstBuildChecker.pyc b/FirstBuildChecker.pyc
diff --git a/circularizationCheck.pyc b/circularizationCheck.pyc
diff --git a/genbankOutput.pyc b/genbankOutput.pyc
diff --git a/geneChecker.pyc b/geneChecker.pyc
diff --git a/rename_fasta_seqID.py b/rename_fasta_seqID.py
@@ -35,4 +35,4 @@ def read_fasta(fp):
 	if sys.argv[6] == "yes":
 		fout.write(">"+seqID+"."+str(c)+"\n"+str(resultFile.seq.reverse_complement())+"\n")
 	else:
-		fout.write(">"+str(resultFile.id)+" (reverse)\n"+str(resultFile.seq)+"\n")
+		fout.write(">"+str(resultFile.id)+" (reverse)\n"+str(resultFile.seq.reverse_complement())+"\n")
diff --git a/runIDBA.pyc b/runIDBA.pyc
diff --git a/runMegahit.pyc b/runMegahit.pyc
diff --git a/runMetaspades.pyc b/runMetaspades.pyc
diff --git a/tRNAscanChecker.pyc b/tRNAscanChecker.pyc