Run the following command to install libtiff.
brew install libtiff
Clone the pytiff source.
git clone https://github.com/FZJ-INM1-BDA/pytiff.git
cd pytiff
Then install pytiff from source.
git clone [email protected]:labsyspharm/minerva-author.git
cd minerva-author
conda config --add channels conda-forge
conda create --name author python=3.6 nomkl
conda activate author
pip install numpy
pip install -r requirements.txt
python src/app.py
-
Then, open a browser to
localhost:2020 -
Then, copy the filepath to an OME Tiff
-
Wait for the generation of a full pyramid
At minimum, you'll need to type one 'Group' name into the top dropdown to create a group. For each group you create, you can select channels from the second dropdown and set up their rendering settings with the various sliders. After you hit 'save', look in the directory of the original OME Tiff for an out.yaml configuration file and an out directory of rendered images for use with Minerva Story.
pyinstaller -F --paths $CONDA_PREFIX --add-data 'static:static' src/app.py
Fetch OpenSlide binaries from https://openslide.org/download/#windows-binaries and save the .dll files to /src
pyinstaller -F --paths $env:CONDA_PREFIX --hidden-import="pkg_resources.py2_warn" --add-data 'static;static' src/app.py