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@SABS-R3-Epidemiology

SABS-R3-Epidemiology

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  1. branchpro branchpro Public

    Using branching processes to estimate the time-dependent reproduction number of a disease with imported cases

    Jupyter Notebook 4 1

  2. epiabm epiabm Public

    Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.

    C++ 15 5

  3. seirmo seirmo Public

    This is a project to model the outbreak of an infectious disease with the SEIR model.

    Python 2 2

Repositories

Showing 10 of 20 repositories
  • EpiPI Public

    A package to predict the incidences on each day based on prevalences

    SABS-R3-Epidemiology/EpiPI’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Nov 25, 2024
  • branchpro Public

    Using branching processes to estimate the time-dependent reproduction number of a disease with imported cases

    SABS-R3-Epidemiology/branchpro’s past year of commit activity
    Jupyter Notebook 4 BSD-3-Clause 1 1 0 Updated Nov 14, 2024
  • seirmo Public

    This is a project to model the outbreak of an infectious disease with the SEIR model.

    SABS-R3-Epidemiology/seirmo’s past year of commit activity
    Python 2 BSD-3-Clause 2 5 2 Updated Nov 14, 2024
  • EpiGeoPop Public

    Snakemake workflow to generate country-specific population density data, for use in epidemiological modeling

    SABS-R3-Epidemiology/EpiGeoPop’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Nov 12, 2024
  • rEpiabm Public

    R-wrapper for Epiabm

    SABS-R3-Epidemiology/rEpiabm’s past year of commit activity
    R 0 BSD-3-Clause 0 0 2 Updated Nov 1, 2024
  • EpiOS Public

    Software for optimising sampling strategies using Epiabm output

    SABS-R3-Epidemiology/EpiOS’s past year of commit activity
    Python 1 BSD-3-Clause 0 7 1 Updated Oct 2, 2024
  • epiabm Public

    Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.

    SABS-R3-Epidemiology/epiabm’s past year of commit activity
    C++ 15 BSD-3-Clause 5 9 1 Updated Sep 11, 2024
  • LAMP-testing Public
    SABS-R3-Epidemiology/LAMP-testing’s past year of commit activity
    0 0 0 0 Updated Apr 26, 2024
  • wolsim Public

    Agent based modelling of Wolbachia pathogen blocking

    SABS-R3-Epidemiology/wolsim’s past year of commit activity
    Python 0 0 0 0 Updated Apr 24, 2024
  • abm-project-2023 Public

    Mini project for an ABM

    SABS-R3-Epidemiology/abm-project-2023’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 6, 2023
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