Pharmcat update 2.12.0 #38
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ramsainanduri
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May 27, 2024
ramsainanduri
commented
- Major change to the process flow
- Updated pharmact to v2.12.0
- Updated ReadMe.md
Updated the sub workflow with respect to pharmcat, now the haplotype filtration takes palce first and then ontarget followed by annotation..
…pes not just the top ones, report title
ramsainanduri
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Jan 22, 2025
* Telephone number for medical questions in the report (#32) * updated version in configs * Removed print statements * Added telephone number in the report for medical information * update version in the configs * updated changelog.md * Updated DPYD HAPB3 haplotype related rsids (#33) * Update CHANGELOG.md Signed-off-by: Ram Sai Nanduri <[email protected]> * Added a new module for pharmcat (#35) * reflects v1.1.0 Signed-off-by: Ram Sai Nanduri <[email protected]> * Report update (#37) * Update report text * Updated changelog and added github workflow for changelog reminder * Update README.md Signed-off-by: Ram Sai Nanduri <[email protected]> * Pharmcat update 2.12.0 (#38) * Updated Pharmacat module Updated the sub workflow with respect to pharmcat, now the haplotype filtration takes palce first and then ontarget followed by annotation.. * updated annotation output file name * Updated configs, modules and workflows with respect to pharmcat * Added options for the report - extended report, match all the haplotypes not just the top ones, report title * Updated ReadMe and ChangeLog * Update config (#40) * fixed pharmat memory bug * Updated Changelog * Fixed Zero division error when there is no allele depth for a variant (#43) * Fixed Zero division error when there is no allele depth for a variant * Updated Changelog #42 #43 * Added Fastq support - refactored the structure of the modules , subworkflows and workflows - based on the input the workflows are selected - removed support for HG19 - draft version of the workflow Things to do - add more support for pharmcat - add suport for cnvs --------- Signed-off-by: Ram Sai Nanduri <[email protected]>
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