Update OC Week 50 #78
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* [pre-commit.ci] pre-commit autoupdate (#48) updates: - [github.com/PyCQA/flake8: 7.1.0 → 7.1.1](PyCQA/flake8@7.1.0...7.1.1) - [github.com/awslabs/cfn-python-lint: v1.9.0 → v1.15.0](aws-cloudformation/cfn-lint@v1.9.0...v1.15.0) - [github.com/psf/black: 24.4.2 → 24.8.0](psf/black@24.4.2...24.8.0) - [github.com/sirosen/check-jsonschema: 0.29.1 → 0.29.2](python-jsonschema/check-jsonschema@0.29.1...0.29.2) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [IT-3918] Fix the image URLs returned by the image service (#51) * update the config of the image service * use `{fully_qualified_domain_name}` * use an f-string * [pre-commit.ci] pre-commit autoupdate (#52) updates: - [github.com/awslabs/cfn-python-lint: v1.15.0 → v1.15.2](aws-cloudformation/cfn-lint@v1.15.0...v1.15.2) - [github.com/sirosen/check-jsonschema: 0.29.2 → 0.29.3](python-jsonschema/check-jsonschema@0.29.2...0.29.3) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#53) updates: - [github.com/pre-commit/pre-commit-hooks: v4.6.0 → v5.0.0](pre-commit/pre-commit-hooks@v4.6.0...v5.0.0) - [github.com/awslabs/cfn-python-lint: v1.15.2 → v1.16.0](aws-cloudformation/cfn-lint@v1.15.2...v1.16.0) - [github.com/psf/black: 24.8.0 → 24.10.0](psf/black@24.8.0...24.10.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Parametrize stack version and update app config (#54) * parametrize stack version * update data update date * set Google tag manager ID * rename `stack_version` to `image_version` * Increase GH workflow timeout (#55) A change[1] was made to update all containers at the same time which takes longer to deploy so we need to increase the deployment timeout. [1] #54 * Update stage environment (#57) * [pre-commit.ci] pre-commit autoupdate (#48) updates: - [github.com/PyCQA/flake8: 7.1.0 → 7.1.1](PyCQA/flake8@7.1.0...7.1.1) - [github.com/awslabs/cfn-python-lint: v1.9.0 → v1.15.0](aws-cloudformation/cfn-lint@v1.9.0...v1.15.0) - [github.com/psf/black: 24.4.2 → 24.8.0](psf/black@24.4.2...24.8.0) - [github.com/sirosen/check-jsonschema: 0.29.1 → 0.29.2](python-jsonschema/check-jsonschema@0.29.1...0.29.2) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [IT-3918] Fix the image URLs returned by the image service (#51) * update the config of the image service * use `{fully_qualified_domain_name}` * use an f-string * [pre-commit.ci] pre-commit autoupdate (#52) updates: - [github.com/awslabs/cfn-python-lint: v1.15.0 → v1.15.2](aws-cloudformation/cfn-lint@v1.15.0...v1.15.2) - [github.com/sirosen/check-jsonschema: 0.29.2 → 0.29.3](python-jsonschema/check-jsonschema@0.29.2...0.29.3) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#53) updates: - [github.com/pre-commit/pre-commit-hooks: v4.6.0 → v5.0.0](pre-commit/pre-commit-hooks@v4.6.0...v5.0.0) - [github.com/awslabs/cfn-python-lint: v1.15.2 → v1.16.0](aws-cloudformation/cfn-lint@v1.15.2...v1.16.0) - [github.com/psf/black: 24.8.0 → 24.10.0](psf/black@24.8.0...24.10.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Parametrize stack version and update app config (#54) * parametrize stack version * update data update date * set Google tag manager ID * rename `stack_version` to `image_version` * Increase GH workflow timeout (#55) A change[1] was made to update all containers at the same time which takes longer to deploy so we need to increase the deployment timeout. [1] #54 --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Khai Do <[email protected]> * [pre-commit.ci] pre-commit autoupdate (#56) updates: - [github.com/awslabs/cfn-python-lint: v1.16.0 → v1.16.1](aws-cloudformation/cfn-lint@v1.16.0...v1.16.1) - [github.com/sirosen/check-jsonschema: 0.29.3 → 0.29.4](python-jsonschema/check-jsonschema@0.29.3...0.29.4) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#59) updates: - [github.com/awslabs/cfn-python-lint: v1.16.1 → v1.18.1](aws-cloudformation/cfn-lint@v1.16.1...v1.18.1) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#60) updates: - [github.com/awslabs/cfn-python-lint: v1.18.1 → v1.18.2](aws-cloudformation/cfn-lint@v1.18.1...v1.18.2) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Set concurrency to 5 (best results) (#61) * [pre-commit.ci] pre-commit autoupdate (#62) updates: - [github.com/awslabs/cfn-python-lint: v1.18.2 → v1.18.4](aws-cloudformation/cfn-lint@v1.18.2...v1.18.4) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * update image tag, app version and data release date (#63) * [pre-commit.ci] pre-commit autoupdate (#66) updates: - [github.com/awslabs/cfn-python-lint: v1.18.4 → v1.19.0](aws-cloudformation/cfn-lint@v1.18.4...v1.19.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Refactor mounting volumes (#67) The current implementation to mount volumes was very specific to one container. We are replacing it with an implementation that is much more generic to make it easy to mount volumes in other containers. * [IT-4003] Auto-update pre-commit hook versions monthly Change the frequency that PRs to update pre-commit hook versions are auto-generated from weekly (the default) to monthly. * Update to OC v1.1.1 (#69) * Update to v1.1.1 * update data updated on * [pre-commit.ci] pre-commit autoupdate (#70) updates: - [github.com/awslabs/cfn-python-lint: v1.19.0 → v1.20.1](aws-cloudformation/cfn-lint@v1.19.0...v1.20.1) - [github.com/sirosen/check-jsonschema: 0.29.4 → 0.30.0](python-jsonschema/check-jsonschema@0.29.4...0.30.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [IT-3951] Fix guardduty container (#71) We enable guardduty security monitoring for ECS in every account. For that to work we need to give Fragate tasks access to do ECS stuff with the service-role/AmazonECSTaskExecutionRolePolicy[1]. [1] https://docs.aws.amazon.com/guardduty/latest/ug/prereq-runtime-monitoring-ecs-support.html#before-enable-runtime-monitoring-ecs * remove source.bat (#74) * Add Docker in Docker to the dev container (#73) * Add Docker in Docker to the devcontainer * add docs about docker * forward local environment variables to the devcontainer * remove containerEnv * Add AWS Lambda for upcoming data integration (ARCH-356) (#72) * update docs on setup tools * define lambda role and function * update path to Dockerfile * update README * trigger the lambda every 5 minutes * use plural form of the unit * Remove lambda fct architecture * Migrate data integration code to L2 constructs * Add @DataClass to DataIntegrationProps * Add docstrings * Replace `_lambda` by `lambda_` * Add docstrings * Add docstrings * Externalize the description of the schedule (#75) * define lambda role and function * update path to Dockerfile * Externalize the description of the schedule * Merge dev to stage (#76) * [pre-commit.ci] pre-commit autoupdate (#48) updates: - [github.com/PyCQA/flake8: 7.1.0 → 7.1.1](PyCQA/flake8@7.1.0...7.1.1) - [github.com/awslabs/cfn-python-lint: v1.9.0 → v1.15.0](aws-cloudformation/cfn-lint@v1.9.0...v1.15.0) - [github.com/psf/black: 24.4.2 → 24.8.0](psf/black@24.4.2...24.8.0) - [github.com/sirosen/check-jsonschema: 0.29.1 → 0.29.2](python-jsonschema/check-jsonschema@0.29.1...0.29.2) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [IT-3918] Fix the image URLs returned by the image service (#51) * update the config of the image service * use `{fully_qualified_domain_name}` * use an f-string * [pre-commit.ci] pre-commit autoupdate (#52) updates: - [github.com/awslabs/cfn-python-lint: v1.15.0 → v1.15.2](aws-cloudformation/cfn-lint@v1.15.0...v1.15.2) - [github.com/sirosen/check-jsonschema: 0.29.2 → 0.29.3](python-jsonschema/check-jsonschema@0.29.2...0.29.3) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#53) updates: - [github.com/pre-commit/pre-commit-hooks: v4.6.0 → v5.0.0](pre-commit/pre-commit-hooks@v4.6.0...v5.0.0) - [github.com/awslabs/cfn-python-lint: v1.15.2 → v1.16.0](aws-cloudformation/cfn-lint@v1.15.2...v1.16.0) - [github.com/psf/black: 24.8.0 → 24.10.0](psf/black@24.8.0...24.10.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Parametrize stack version and update app config (#54) * parametrize stack version * update data update date * set Google tag manager ID * rename `stack_version` to `image_version` * Increase GH workflow timeout (#55) A change[1] was made to update all containers at the same time which takes longer to deploy so we need to increase the deployment timeout. [1] #54 * [pre-commit.ci] pre-commit autoupdate (#56) updates: - [github.com/awslabs/cfn-python-lint: v1.16.0 → v1.16.1](aws-cloudformation/cfn-lint@v1.16.0...v1.16.1) - [github.com/sirosen/check-jsonschema: 0.29.3 → 0.29.4](python-jsonschema/check-jsonschema@0.29.3...0.29.4) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#59) updates: - [github.com/awslabs/cfn-python-lint: v1.16.1 → v1.18.1](aws-cloudformation/cfn-lint@v1.16.1...v1.18.1) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#60) updates: - [github.com/awslabs/cfn-python-lint: v1.18.1 → v1.18.2](aws-cloudformation/cfn-lint@v1.18.1...v1.18.2) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Set concurrency to 5 (best results) (#61) * [pre-commit.ci] pre-commit autoupdate (#62) updates: - [github.com/awslabs/cfn-python-lint: v1.18.2 → v1.18.4](aws-cloudformation/cfn-lint@v1.18.2...v1.18.4) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * update image tag, app version and data release date (#63) * [pre-commit.ci] pre-commit autoupdate (#66) updates: - [github.com/awslabs/cfn-python-lint: v1.18.4 → v1.19.0](aws-cloudformation/cfn-lint@v1.18.4...v1.19.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Refactor mounting volumes (#67) The current implementation to mount volumes was very specific to one container. We are replacing it with an implementation that is much more generic to make it easy to mount volumes in other containers. * [IT-4003] Auto-update pre-commit hook versions monthly Change the frequency that PRs to update pre-commit hook versions are auto-generated from weekly (the default) to monthly. * Update to OC v1.1.1 (#69) * Update to v1.1.1 * update data updated on * [pre-commit.ci] pre-commit autoupdate (#70) updates: - [github.com/awslabs/cfn-python-lint: v1.19.0 → v1.20.1](aws-cloudformation/cfn-lint@v1.19.0...v1.20.1) - [github.com/sirosen/check-jsonschema: 0.29.4 → 0.30.0](python-jsonschema/check-jsonschema@0.29.4...0.30.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * [IT-3951] Fix guardduty container (#71) We enable guardduty security monitoring for ECS in every account. For that to work we need to give Fragate tasks access to do ECS stuff with the service-role/AmazonECSTaskExecutionRolePolicy[1]. [1] https://docs.aws.amazon.com/guardduty/latest/ug/prereq-runtime-monitoring-ecs-support.html#before-enable-runtime-monitoring-ecs * remove source.bat (#74) * Add Docker in Docker to the dev container (#73) * Add Docker in Docker to the devcontainer * add docs about docker * forward local environment variables to the devcontainer * remove containerEnv * Add AWS Lambda for upcoming data integration (ARCH-356) (#72) * update docs on setup tools * define lambda role and function * update path to Dockerfile * update README * trigger the lambda every 5 minutes * use plural form of the unit * Remove lambda fct architecture * Migrate data integration code to L2 constructs * Add @DataClass to DataIntegrationProps * Add docstrings * Replace `_lambda` by `lambda_` * Add docstrings * Add docstrings * Externalize the description of the schedule (#75) * define lambda role and function * update path to Dockerfile * Externalize the description of the schedule --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Khai Do <[email protected]> Co-authored-by: Joni Harker <[email protected]> Co-authored-by: Joni Harker <[email protected]> * update dev (#78) * Increase role duration to 90 minutes (#79) --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Khai Do <[email protected]> Co-authored-by: Joni Harker <[email protected]> Co-authored-by: Joni Harker <[email protected]>
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Contributes to https://sagebionetworks.jira.com/browse/ARCH-369