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[SCHEMATIC-192] v24.12.1 release (dev -> main) #1557

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@thomasyu888 thomasyu888 commented Dec 16, 2024

v24.12.1 release - creating it so the tests can run

thomasyu888 and others added 20 commits November 12, 2024 18:32
[SCHEMATIC-1] BugFix: manifest submission when data previously annotated without manifest upload
* Authenticated export of telemetry data, updating to HTTP otel library
…tests

[FDS-2238, FDS-2236] Automate CLI test plan
…LI` commands from potentially erroring when doing a pip install (#1540)

* Make otel flash non-optional

* Add dependencies as non-optional
…test runs (#1550)

* Support exporting telemetry data from GH run via access token retrieved via oauth2
…Path module for checking cache size (#1542)

* Add version to click cli

* Add version

* Run black

* Reformat

* Fix

* Update schematic/schemas/data_model_parser.py

* Add test for check_synapse_cache_size

* Reformat

* Fix tests

* Remove unused parameter

* Install all-extras for now

* Make otel flash non-optional

* Update dockerfile

* Add dependencies as non-optional

* Update pyproject toml

* Fix trivy issue

* Add service version

* Run black

* Move all utils.general tests into separate folder

* Use pre-commit

* Add updates to contribution doc

* Fix

* Add service version to log provider

---------

Co-authored-by: BryanFauble <[email protected]>
* Set instance id in github CI run, uninstrument flask auto during integration test run
…ne doesn't have `entityId` (#1551)

* adds error handling

* adds unit tests for _get_file_entityIds

* updates error message

* adds entityid check to parent func

* updates docstring
source manifest file paths from synapse fileviews at generation
… with the NA values argument (#1553)

* Wrap pandas functions to support not including `None` with the NA values argument

* Ignore types

* pylint issues

* ordering of ignore

* Add to integration test to cover none in a manifest

* Add additional test for manifest

* [SCHEMATIC-210] Add attribute to nones data model (#1555)

Update example_test_nones.model.csv component and add new invalid manifest with nones

* first commit

* ran black

* add test for validateModelManifest

* [SCHEMATIC-214] change data model and component (#1556)

* add valid values to Patient attributes

* update data model

* add test manifests

* update test for new model

* update test for new valid value

* change test to use new manifests

* remove uneeded test file

* revert file

* revert file

* change tests to use new manifests

* remove uneeded manifests

* ran black

* add tests back in

* ran black

* revert manifest

* Split up valid and errored test as separate testing functions

* Remove unused import

---------

Co-authored-by: Gianna Jordan <[email protected]>
Co-authored-by: Andrew Lamb <[email protected]>
Co-authored-by: Thomas Yu <[email protected]>
@thomasyu888 thomasyu888 requested a review from a team as a code owner December 16, 2024 07:11
@thomasyu888 thomasyu888 reopened this Dec 16, 2024
@thomasyu888 thomasyu888 changed the title v24.12.1 release v24.12.1 release (dev -> main) Dec 16, 2024
@thomasyu888 thomasyu888 changed the title v24.12.1 release (dev -> main) [SCHEMATIC-192] v24.12.1 release (dev -> main) Dec 16, 2024
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7 participants