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deploy: cb5affd
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@DavidKerkmann
DavidKerkmann committed Aug 5, 2024
1 parent 985578d commit c849cc5
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20 changes: 10 additions & 10 deletions coverage/cpp/index-sort-f.html
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<td class="headerValue">coverage.info</td>
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<td class="headerCovTableEntry">10660</td>
<td class="headerCovTableEntry">11055</td>
<td class="headerCovTableEntry">10666</td>
<td class="headerCovTableEntry">11061</td>
<td class="headerCovTableEntryHi">96.4 %</td>
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<tr>
<td class="headerItem">Date:</td>
<td class="headerValue">2024-08-01 13:11:40</td>
<td class="headerValue">2024-08-05 15:05:11</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntry">7385</td>
<td class="headerCovTableEntry">8454</td>
<td class="headerCovTableEntry">7390</td>
<td class="headerCovTableEntry">8459</td>
<td class="headerCovTableEntryMed">87.4 %</td>
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<tr><td><img src="glass.png" width=3 height=3 alt=""></td></tr>
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<td class="coverPerHi">95.0&nbsp;%</td>
<td class="coverNumHi">1253 / 1319</td>
<td class="coverPerHi">93.8&nbsp;%</td>
<td class="coverNumHi">3632 / 3873</td>
<td class="coverNumHi">3636 / 3877</td>
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<tr>
<td class="coverFile"><a href="memilio/math/index.html">memilio/math</a></td>
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<tr>
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<table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=96 height=10 alt="96.2%"><img src="snow.png" width=4 height=10 alt="96.2%"></td></tr></table>
<table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=96 height=10 alt="96.3%"><img src="snow.png" width=4 height=10 alt="96.3%"></td></tr></table>
</td>
<td class="coverPerHi">96.2&nbsp;%</td>
<td class="coverNumHi">1511 / 1570</td>
<td class="coverPerHi">96.3&nbsp;%</td>
<td class="coverNumHi">1517 / 1576</td>
<td class="coverPerHi">97.1&nbsp;%</td>
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<td class="coverFile"><a href="models/ode_secir/index.html">models/ode_secir</a></td>
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20 changes: 10 additions & 10 deletions coverage/cpp/index-sort-l.html
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Expand Up @@ -31,17 +31,17 @@
<td class="headerValue">coverage.info</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntry">10660</td>
<td class="headerCovTableEntry">11055</td>
<td class="headerCovTableEntry">10666</td>
<td class="headerCovTableEntry">11061</td>
<td class="headerCovTableEntryHi">96.4 %</td>
</tr>
<tr>
<td class="headerItem">Date:</td>
<td class="headerValue">2024-08-01 13:11:40</td>
<td class="headerValue">2024-08-05 15:05:11</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntry">7385</td>
<td class="headerCovTableEntry">8454</td>
<td class="headerCovTableEntry">7390</td>
<td class="headerCovTableEntry">8459</td>
<td class="headerCovTableEntryMed">87.4 %</td>
</tr>
<tr><td><img src="glass.png" width=3 height=3 alt=""></td></tr>
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<td class="coverPerHi">95.0&nbsp;%</td>
<td class="coverNumHi">1253 / 1319</td>
<td class="coverPerHi">93.8&nbsp;%</td>
<td class="coverNumHi">3632 / 3873</td>
<td class="coverNumHi">3636 / 3877</td>
</tr>
<tr>
<td class="coverFile"><a href="models/abm/index.html">models/abm</a></td>
<td class="coverBar" align="center">
<table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=96 height=10 alt="96.2%"><img src="snow.png" width=4 height=10 alt="96.2%"></td></tr></table>
<table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=96 height=10 alt="96.3%"><img src="snow.png" width=4 height=10 alt="96.3%"></td></tr></table>
</td>
<td class="coverPerHi">96.2&nbsp;%</td>
<td class="coverNumHi">1511 / 1570</td>
<td class="coverPerHi">96.3&nbsp;%</td>
<td class="coverNumHi">1517 / 1576</td>
<td class="coverPerHi">97.1&nbsp;%</td>
<td class="coverNumHi">400 / 412</td>
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<td class="coverFile"><a href="memilio/geography/index.html">memilio/geography</a></td>
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20 changes: 10 additions & 10 deletions coverage/cpp/index.html
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Expand Up @@ -31,17 +31,17 @@
<td class="headerValue">coverage.info</td>
<td></td>
<td class="headerItem">Lines:</td>
<td class="headerCovTableEntry">10660</td>
<td class="headerCovTableEntry">11055</td>
<td class="headerCovTableEntry">10666</td>
<td class="headerCovTableEntry">11061</td>
<td class="headerCovTableEntryHi">96.4 %</td>
</tr>
<tr>
<td class="headerItem">Date:</td>
<td class="headerValue">2024-08-01 13:11:40</td>
<td class="headerValue">2024-08-05 15:05:11</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntry">7385</td>
<td class="headerCovTableEntry">8454</td>
<td class="headerCovTableEntry">7390</td>
<td class="headerCovTableEntry">8459</td>
<td class="headerCovTableEntryMed">87.4 %</td>
</tr>
<tr><td><img src="glass.png" width=3 height=3 alt=""></td></tr>
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<td class="coverPerHi">95.0&nbsp;%</td>
<td class="coverNumHi">1253 / 1319</td>
<td class="coverPerHi">93.8&nbsp;%</td>
<td class="coverNumHi">3632 / 3873</td>
<td class="coverNumHi">3636 / 3877</td>
</tr>
<tr>
<td class="coverFile"><a href="models/abm/index.html">models/abm</a></td>
<td class="coverBar" align="center">
<table border=0 cellspacing=0 cellpadding=1><tr><td class="coverBarOutline"><img src="emerald.png" width=96 height=10 alt="96.2%"><img src="snow.png" width=4 height=10 alt="96.2%"></td></tr></table>
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</td>
<td class="coverPerHi">96.2&nbsp;%</td>
<td class="coverNumHi">1511 / 1570</td>
<td class="coverPerHi">96.3&nbsp;%</td>
<td class="coverNumHi">1517 / 1576</td>
<td class="coverPerHi">97.1&nbsp;%</td>
<td class="coverNumHi">400 / 412</td>
<td class="coverNumHi">401 / 413</td>
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<td class="coverFile"><a href="models/ide_secir/index.html">models/ide_secir</a></td>
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6 changes: 3 additions & 3 deletions coverage/cpp/memilio/compartments/compartmentalmodel.h.func-sort-c.html
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</tr>
<tr>
<td class="headerItem">Date:</td>
<td class="headerValue">2024-08-01 13:11:40</td>
<td class="headerValue">2024-08-05 15:05:11</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntry">74</td>
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</tr>
<tr>
<td class="coverFn"><a href="compartmentalmodel.h.gcov.html#119">mio::CompartmentalModel&lt;double, mio::oseir::InfectionState, mio::Populations&lt;double, mio::AgeGroup, mio::oseir::InfectionState&gt;, mio::oseir::Parameters&lt;double&gt; &gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
<td class="coverFnHi">18915</td>
<td class="coverFnHi">18903</td>
</tr>
<tr>
<td class="coverFn"><a href="compartmentalmodel.h.gcov.html#119">mio::CompartmentalModel&lt;double, mio::osecir::InfectionState, mio::Populations&lt;double, mio::AgeGroup, mio::osecir::InfectionState&gt;, mio::osecir::Parameters&lt;double&gt; &gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
<td class="coverFnHi">45240</td>
<td class="coverFnHi">44988</td>
</tr>
</table>
<br>
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6 changes: 3 additions & 3 deletions coverage/cpp/memilio/compartments/compartmentalmodel.h.func.html
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Expand Up @@ -37,7 +37,7 @@
</tr>
<tr>
<td class="headerItem">Date:</td>
<td class="headerValue">2024-08-01 13:11:40</td>
<td class="headerValue">2024-08-05 15:05:11</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntry">74</td>
Expand Down Expand Up @@ -421,7 +421,7 @@
</tr>
<tr>
<td class="coverFn"><a href="compartmentalmodel.h.gcov.html#119">mio::CompartmentalModel&lt;double, mio::oseir::InfectionState, mio::Populations&lt;double, mio::AgeGroup, mio::oseir::InfectionState&gt;, mio::oseir::Parameters&lt;double&gt; &gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
<td class="coverFnHi">18915</td>
<td class="coverFnHi">18903</td>
</tr>
<tr>
<td class="coverFn"><a href="compartmentalmodel.h.gcov.html#96">mio::CompartmentalModel&lt;double, mio::oseir::InfectionState, mio::Populations&lt;double, mio::oseir::InfectionState, CatA, CatB, CatC&gt;, mio::oseir::Parameters&lt;double&gt; &gt;::get_derivatives(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
Expand Down Expand Up @@ -469,7 +469,7 @@
</tr>
<tr>
<td class="coverFn"><a href="compartmentalmodel.h.gcov.html#119">mio::CompartmentalModel&lt;double, mio::osecir::InfectionState, mio::Populations&lt;double, mio::AgeGroup, mio::osecir::InfectionState&gt;, mio::osecir::Parameters&lt;double&gt; &gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
<td class="coverFnHi">45240</td>
<td class="coverFnHi">44988</td>
</tr>
<tr>
<td class="coverFn"><a href="compartmentalmodel.h.gcov.html#96">mio::CompartmentalModel&lt;double, mio::osecirvvs::InfectionState, mio::Populations&lt;double, mio::AgeGroup, mio::osecirvvs::InfectionState&gt;, mio::osecirvvs::Parameters&lt;double&gt; &gt;::get_derivatives(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
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10 changes: 5 additions & 5 deletions coverage/cpp/memilio/compartments/compartmentalmodel.h.gcov.html
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Expand Up @@ -37,7 +37,7 @@
</tr>
<tr>
<td class="headerItem">Date:</td>
<td class="headerValue">2024-08-01 13:11:40</td>
<td class="headerValue">2024-08-05 15:05:11</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntry">74</td>
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<a name="118"><span class="lineNum"> 118 </span> : * @param[in] t The current time.</a>
<a name="119"><span class="lineNum"> 119 </span> : * @param[out] dydt A reference to the calculated output.</a>
<a name="120"><span class="lineNum"> 120 </span> : */</a>
<a name="121"><span class="lineNum"> 121 </span><span class="lineCov"> 66065 : void eval_right_hand_side(Eigen::Ref&lt;const Vector&lt;FP&gt;&gt; pop, Eigen::Ref&lt;const Vector&lt;FP&gt;&gt; y, FP t,</span></a>
<a name="121"><span class="lineNum"> 121 </span><span class="lineCov"> 65801 : void eval_right_hand_side(Eigen::Ref&lt;const Vector&lt;FP&gt;&gt; pop, Eigen::Ref&lt;const Vector&lt;FP&gt;&gt; y, FP t,</span></a>
<a name="122"><span class="lineNum"> 122 </span> : Eigen::Ref&lt;Vector&lt;FP&gt;&gt; dydt) const</a>
<a name="123"><span class="lineNum"> 123 </span> : {</a>
<a name="124"><span class="lineNum"> 124 </span><span class="lineCov"> 66065 : dydt.setZero();</span></a>
<a name="125"><span class="lineNum"> 125 </span><span class="lineCov"> 66065 : this-&gt;get_derivatives(pop, y, t, dydt);</span></a>
<a name="126"><span class="lineNum"> 126 </span><span class="lineCov"> 66065 : }</span></a>
<a name="124"><span class="lineNum"> 124 </span><span class="lineCov"> 65801 : dydt.setZero();</span></a>
<a name="125"><span class="lineNum"> 125 </span><span class="lineCov"> 65801 : this-&gt;get_derivatives(pop, y, t, dydt);</span></a>
<a name="126"><span class="lineNum"> 126 </span><span class="lineCov"> 65801 : }</span></a>
<a name="127"><span class="lineNum"> 127 </span> : </a>
<a name="128"><span class="lineNum"> 128 </span> : /**</a>
<a name="129"><span class="lineNum"> 129 </span> : * @brief Get the initial conditions for the ODE dydt = f(y, t).</a>
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