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@HenrZu
HenrZu committed Dec 5, 2023
1 parent 56a249a commit e72de9f
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Showing 410 changed files with 2,359 additions and 2,352 deletions.
2 changes: 1 addition & 1 deletion coverage/cpp/index-sort-f.html
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<td class="headerValue">2023-12-04 15:09:45</td>
<td class="headerValue">2023-12-05 12:49:30</td>
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2 changes: 1 addition & 1 deletion coverage/cpp/index-sort-l.html
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<td class="headerValue">2023-12-04 15:09:45</td>
<td class="headerValue">2023-12-05 12:49:30</td>
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2 changes: 1 addition & 1 deletion coverage/cpp/index.html
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<td class="headerItem">Date:</td>
<td class="headerValue">2023-12-04 15:09:45</td>
<td class="headerValue">2023-12-05 12:49:30</td>
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6 changes: 3 additions & 3 deletions coverage/cpp/memilio/compartments/compartmentalmodel.h.func-sort-c.html
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<td class="headerItem">Date:</td>
<td class="headerValue">2023-12-04 15:09:45</td>
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<td class="coverFn"><a href="compartmentalmodel.h.gcov.html#118">mio::CompartmentalModel&lt;mio::oseir::InfectionState, mio::Populations&lt;mio::oseir::InfectionState&gt;, mio::oseir::Parameters&gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
<td class="coverFnHi">19413</td>
<td class="coverFnHi">19401</td>
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<td class="coverFn"><a href="compartmentalmodel.h.gcov.html#118">mio::CompartmentalModel&lt;mio::osecir::InfectionState, mio::Populations&lt;mio::AgeGroup, mio::osecir::InfectionState&gt;, mio::osecir::Parameters&gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
<td class="coverFnHi">21420</td>
<td class="coverFnHi">20892</td>
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6 changes: 3 additions & 3 deletions coverage/cpp/memilio/compartments/compartmentalmodel.h.func.html
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<td class="headerItem">Date:</td>
<td class="headerValue">2023-12-04 15:09:45</td>
<td class="headerValue">2023-12-05 12:49:30</td>
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<td class="headerCovTableEntry">31</td>
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<td class="coverFn"><a href="compartmentalmodel.h.gcov.html#118">mio::CompartmentalModel&lt;mio::oseir::InfectionState, mio::Populations&lt;mio::oseir::InfectionState&gt;, mio::oseir::Parameters&gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
<td class="coverFnHi">19413</td>
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<td class="coverFn"><a href="compartmentalmodel.h.gcov.html#96">mio::CompartmentalModel&lt;mio::osecir::InfectionState, mio::Populations&lt;mio::AgeGroup, mio::osecir::InfectionState&gt;, mio::osecir::Parameters&gt;::get_derivatives(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
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<td class="coverFn"><a href="compartmentalmodel.h.gcov.html#118">mio::CompartmentalModel&lt;mio::osecir::InfectionState, mio::Populations&lt;mio::AgeGroup, mio::osecir::InfectionState&gt;, mio::osecir::Parameters&gt;::eval_right_hand_side(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
<td class="coverFnHi">21420</td>
<td class="coverFnHi">20892</td>
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<td class="coverFn"><a href="compartmentalmodel.h.gcov.html#96">mio::CompartmentalModel&lt;mio::osecirvvs::InfectionState, mio::Populations&lt;mio::AgeGroup, mio::osecirvvs::InfectionState&gt;, mio::osecirvvs::Parameters&gt;::get_derivatives(Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt; const, 0, Eigen::InnerStride&lt;1&gt; &gt;, double, Eigen::Ref&lt;Eigen::Matrix&lt;double, -1, 1, 0, -1, 1&gt;, 0, Eigen::InnerStride&lt;1&gt; &gt;) const</a></td>
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10 changes: 5 additions & 5 deletions coverage/cpp/memilio/compartments/compartmentalmodel.h.gcov.html
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</tr>
<tr>
<td class="headerItem">Date:</td>
<td class="headerValue">2023-12-04 15:09:45</td>
<td class="headerValue">2023-12-05 12:49:30</td>
<td></td>
<td class="headerItem">Functions:</td>
<td class="headerCovTableEntry">31</td>
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<a name="117"><span class="lineNum"> 117 </span> : * @param t the current time</a>
<a name="118"><span class="lineNum"> 118 </span> : * @param dydt a reference to the calculated output</a>
<a name="119"><span class="lineNum"> 119 </span> : */</a>
<a name="120"><span class="lineNum"> 120 </span><span class="lineCov"> 42057 : void eval_right_hand_side(Eigen::Ref&lt;const Eigen::VectorXd&gt; pop, Eigen::Ref&lt;const Eigen::VectorXd&gt; y, double t,</span></a>
<a name="120"><span class="lineNum"> 120 </span><span class="lineCov"> 41517 : void eval_right_hand_side(Eigen::Ref&lt;const Eigen::VectorXd&gt; pop, Eigen::Ref&lt;const Eigen::VectorXd&gt; y, double t,</span></a>
<a name="121"><span class="lineNum"> 121 </span> : Eigen::Ref&lt;Eigen::VectorXd&gt; dydt) const</a>
<a name="122"><span class="lineNum"> 122 </span> : {</a>
<a name="123"><span class="lineNum"> 123 </span><span class="lineCov"> 42057 : dydt.setZero();</span></a>
<a name="124"><span class="lineNum"> 124 </span><span class="lineCov"> 42057 : this-&gt;get_derivatives(pop, y, t, dydt);</span></a>
<a name="125"><span class="lineNum"> 125 </span><span class="lineCov"> 42057 : }</span></a>
<a name="123"><span class="lineNum"> 123 </span><span class="lineCov"> 41517 : dydt.setZero();</span></a>
<a name="124"><span class="lineNum"> 124 </span><span class="lineCov"> 41517 : this-&gt;get_derivatives(pop, y, t, dydt);</span></a>
<a name="125"><span class="lineNum"> 125 </span><span class="lineCov"> 41517 : }</span></a>
<a name="126"><span class="lineNum"> 126 </span> : </a>
<a name="127"><span class="lineNum"> 127 </span> : /**</a>
<a name="128"><span class="lineNum"> 128 </span> : * @brief get_initial_values returns the initial values for the compartmental populations.</a>
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