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1036 Simulations from paper to investigate behavior of IDE model #1130

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@annawendler annawendler commented Sep 27, 2024

Changes and Information

  • Add simulations and plots from paper to main branch
  • In particular, the following simulations can be conducted with the added scripts:
    • Changepoint simulation
    • Scenario based on the spread of COVID-19 in Germany
    • Investigation of the rate of convergence of the implemented non-standard numerical solver

Merge Request - Guideline Checklist

Please check our git workflow. Use the draft feature if the Pull Request is not yet ready to review.

Checks by code author

  • Every addressed issue is linked (use the "Closes #ISSUE" keyword below)
  • New code adheres to coding guidelines
  • No large data files have been added (files should in sum not exceed 100 KB, avoid PDFs, Word docs, etc.)
  • Tests are added for new functionality and a local test run was successful (with and without OpenMP)
  • Appropriate documentation for new functionality has been added (Doxygen in the code and Markdown files if necessary)
  • Proper attention to licenses, especially no new third-party software with conflicting license has been added
  • (For ABM development) Checked benchmark results and ran and posted a local test above from before and after development to ensure performance is monitored.

Checks by code reviewer(s)

  • Corresponding issue(s) is/are linked and addressed
  • Code is clean of development artifacts (no deactivated or commented code lines, no debugging printouts, etc.)
  • Appropriate unit tests have been added, CI passes, code coverage and performance is acceptable (did not decrease)
  • No large data files added in the whole history of commits(files should in sum not exceed 100 KB, avoid PDFs, Word docs, etc.)
  • On merge, add 2-5 lines with the changes (main added features, changed items, or corrected bugs) to the merge-commit-message. This can be taken from the briefly-list-the-changes above (best case) or the separate commit messages (worst case).

Closes #1036
Closes #1097
Closes #411

annawendler and others added 30 commits May 21, 2024 08:37
…e-of-the-discretization-scheme-from-the-ide-model' into 1036-ide-simulations
@mknaranja mknaranja changed the title 1036 ide simulations 1036 IDE simulations Oct 16, 2024
@annawendler annawendler changed the title 1036 IDE simulations 1036 Simulations for paper using IDE model Nov 28, 2024
@annawendler annawendler changed the title 1036 Simulations for paper using IDE model 1036 Simulations to investigate behavior of IDE model Nov 28, 2024
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codecov bot commented Dec 2, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 96.98%. Comparing base (0962eb0) to head (6ba92c5).
Report is 9 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1130      +/-   ##
==========================================
+ Coverage   96.59%   96.98%   +0.39%     
==========================================
  Files         137      142       +5     
  Lines       11057    11873     +816     
==========================================
+ Hits        10680    11515     +835     
+ Misses        377      358      -19     
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@annawendler annawendler changed the title 1036 Simulations to investigate behavior of IDE model 1036 Simulations from paper to investigate behavior of IDE model Dec 19, 2024
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