v5.0.0

Catalyst v5.0.0

Diff since v4.3.0

Closed issues:

• Obligate Production terms in stochastic differential equations. (#21)
• Automatic Linear Noise Approximation (#23)
• Proposal: new ReactionDSL based on SciCompDSL (#27)
• Diversify @reaction_network input options (#31)
• Feature request: automatic graph generation. (#33)
• Enable creation of problems with AffineNoise (#61)
• cache network dependency info (#66)
• rhs f and Jacobian representation for larger systems (#93)
• SymEngine changing species names to mathematical constants (#129)
• Relax type requirements of the equilibration functionality. (#134)
• @add_constraints gives error when ODEs verified conservation classes are correct (#150)
• Predefine reaction network structure outside macro (#158)
• stability does not return correct answer. (#163)
• Warnings on 1.4.1 (#192)
• remake issue with JumpProblem (#193)
• renaming discussion (#196)
• Rename the package (#197)
• SteadyState tests failing (at least some times) (#203)

Merged pull requests:

• Transfer internals to ModelingToolkit (#194) (@TorkelE)
• Update api for new MT-based DEBio (#199) (@isaacsas)
• Enable network expansion macros (#200) (@TorkelE)
• update more API functions (#202) (@isaacsas)
• Update docstrings for new docs (#204) (@isaacsas)
• Time for Catalyst (#205) (@isaacsas)
• Allow I as a variable and remove unneeded imports (#206) (@isaacsas)
• New UUID for name change (#208) (@ChrisRackauckas)