v6.1.0

Catalyst v6.1.0

Diff since v6.0.0

Closed issues:

• Converting Reaction network to ODEsystem issue and about oderatelaw function (#269)
• Custom Function (@reaction_func) is not documentable (#278)
• addreactions function doesn't update numspecies, params, paramsmap functions (#279)

Merged pull requests:

• MassInstallAction: Install the TagBot workflow on this repository (#275) (@christopher-dG)
• Update Documenter (#277) (@mkg33)
• MassInstallAction: Install the GitHubActionsCI workflow on this repository (#282) (@christopher-dG)
• CompatHelper: bump compat for "Reexport" to "1.0" (#283) (@github-actions[bot])

v6.0.0

Catalyst v6.0.0

Diff since v5.1.1

Closed issues:

• ReactionNetwork: MethodError: no method matching get_variables(::Float64) (#258)
• Obtaining substrate and product stoichiometric matrices from Catalyst reaction network (#261)

Merged pull requests:

• Documentation changes (#267) (@mkg33)
• WIP Updates for new MTK (#271) (@shashi)
• fix graph plotting and Latexifying (#272) (@isaacsas)
• Api and doc updates (#273) (@isaacsas)

v5.1.1

Catalyst v5.1.1

Diff since v5.1.0

Closed issues:

• Remove evals for RuntimeGeneratedFunctions.jl (#262)
• How best to cite Catalyst.jl? Is there a publication somewhere? (#263)
• visualization graph is not displayed (#266)

Merged pull requests:

• CompatHelper: bump compat for "Catlab" to "0.9" (#265) (@github-actions[bot])

v5.1.0

Catalyst v5.1.0

Diff since v5.0.6

Merged pull requests:

• CompatHelper: bump compat for "Catlab" to "0.8" (#255) (@github-actions[bot])

v5.0.6

Catalyst v5.0.6

Diff since v5.0.5

Closed issues:

• reversible reaction (#198)

Merged pull requests:

• Switch Catlab to imports (#251) (@isaacsas)
• CompatHelper: bump compat for "Latexify" to "0.14" (#252) (@github-actions[bot])
• don't run Latexify tests (#257) (@isaacsas)

v5.0.5

Catalyst v5.0.5

Diff since v5.0.4

Closed issues:

• Error when trying to plot graph (#245)
• Error in Latexify (#246)

Merged pull requests:

• always check if rate is an Operation (#247) (@isaacsas)

v5.0.4

Catalyst v5.0.4

Diff since v5.0.3

Closed issues:

• Documentation to add (#227)
• Reaction rates as functions of time? (#238)
• Problems seem to require a parameter tuple/vector (#239)

Merged pull requests:

• Use numspecies and numparams in API tests (#236) (@zdroid)
• Add no parameter tests (#241) (@TorkelE)
• Fix Usage of ModelingToolkit Accessor Functions (#242) (@isaacsas)
• Add dependants test (#244) (@zdroid)

v5.0.3

Catalyst v5.0.3

Diff since v5.0.2

Closed issues:

• The first tutorial (#221)

Merged pull requests:

• Add noise scaling tests. (#232) (@TorkelE)
• Add edges for rate deps (#233) (@isaacsas)
• add a first tutorial (#234) (@isaacsas)
• Add :⇌, :⇋ to double_arrows (#235) (@zdroid)

v5.0.2

Catalyst v5.0.2

Diff since v5.0.1

Closed issues:

• Latexify for arrays of chemical reactions (#210)
• ReactionSystem graph plotting / generation (#216)

Merged pull requests:

• Generation of graphviz graphs (#228) (@isaacsas)
• add documentation for graphs (#230) (@isaacsas)
• disable checks for adding an exisiting variable (#231) (@isaacsas)

v5.0.1

Catalyst v5.0.1

Diff since v5.0.0