v5.0.0

Catalyst v5.0.0

Diff since v4.3.0

Closed issues:

• Obligate Production terms in stochastic differential equations. (#21)
• Automatic Linear Noise Approximation (#23)
• Proposal: new ReactionDSL based on SciCompDSL (#27)
• Diversify @reaction_network input options (#31)
• Feature request: automatic graph generation. (#33)
• Enable creation of problems with AffineNoise (#61)
• cache network dependency info (#66)
• rhs f and Jacobian representation for larger systems (#93)
• SymEngine changing species names to mathematical constants (#129)
• Relax type requirements of the equilibration functionality. (#134)
• @add_constraints gives error when ODEs verified conservation classes are correct (#150)
• Predefine reaction network structure outside macro (#158)
• stability does not return correct answer. (#163)
• Warnings on 1.4.1 (#192)
• remake issue with JumpProblem (#193)
• renaming discussion (#196)
• Rename the package (#197)
• SteadyState tests failing (at least some times) (#203)

Merged pull requests:

• Transfer internals to ModelingToolkit (#194) (@TorkelE)
• Update api for new MT-based DEBio (#199) (@isaacsas)
• Enable network expansion macros (#200) (@TorkelE)
• update more API functions (#202) (@isaacsas)
• Update docstrings for new docs (#204) (@isaacsas)
• Time for Catalyst (#205) (@isaacsas)
• Allow I as a variable and remove unneeded imports (#206) (@isaacsas)
• New UUID for name change (#208) (@ChrisRackauckas)

v4.3.0

DiffEqBiological v4.3.0

Diff since v4.2.0

Merged pull requests:

• CompatHelper: bump compat for "Latexify" to "0.13" (#187) (@github-actions[bot])
• CompatHelper: bump compat for "SymEngine" to "0.8" (#189) (@github-actions[bot])
• CompatHelper: bump compat for "RecipesBase" to "1.0" (#190) (@github-actions[bot])

v4.2.0

DiffEqBiological v4.2.0

Diff since v4.1.0

Closed issues:

• Not possible to save reaction network solutions with JLD2 (#73)
• Parallelise tests (#157)
• Fix Latexify tests (#180)
• HomotopyContinuation bound (#183)

Merged pull requests:

• Restructure and Parallelize tests (#181) (@ChrisRackauckas)
• Update README.md (#182) (@matbesancon)
• CompatHelper: bump compat for "RecipesBase" to "0.8" (#184) (@github-actions[bot])
• Install TagBot as a GitHub Action (#185) (@JuliaTagBot)
• Fix Latexify tests (#186) (@ChrisRackauckas)

v4.1.0

v4.1.0 (2019-11-30)

Diff since v4.0.2

Closed issues:

• Unsatisfiable requirements - HomotopyContinuation (#177)

Merged pull requests:

• now push up homotopycontinuation bound (#179) (ChrisRackauckas)
• Fix latexification of derivatives. (#176) (korsbo)
• Try to fix tests (#175) (ChrisRackauckas)
• CompatHelper: add new compat entry for "Parameters" at version "0.12" (#173) (github-actions[bot])
• CompatHelper: add new compat entry for "HomotopyContinuation" at version "1.2" (#172) (github-actions[bot])
• CompatHelper: add new compat entry for "SymEngine" at version "0.7" (#171) (github-actions[bot])
• CompatHelper: add new compat entry for "DataStructures" at version "0.17" (#170) (github-actions[bot])
• CompatHelper: add new compat entry for "MacroTools" at version "0.5" (#169) (github-actions[bot])
• CompatHelper: add new compat entry for "Compat" at version "3.0" (#168) (github-actions[bot])
• CompatHelper: add new compat entry for "RecipesBase" at version "0.7" (#167) (github-actions[bot])
• CompatHelper: add new compat entry for "DynamicPolynomials" at version "0.3" (#166) (github-actions[bot])
• CompatHelper: add new compat entry for "Reexport" at version "0.2" (#165) (github-actions[bot])

v4.0.2

v4.0.2 (2019-10-16)

Diff since v4.0.1

Merged pull requests:

• Fix broken Latexify compat constraint. (#160) (korsbo)

v4.0.1

v4.0.1 (2019-10-07)

Diff since v4.0.0

Merged pull requests:

• Fix broken latexify chemical arrow notation. (#159) (korsbo)

v4.0.0

v4.0.0 (2019-10-02)

Diff since v3.11.0

Merged pull requests:

• • Fixes to some minor issues with bifurcation grid plotting. (#156) (TorkelE)
• Add Latexify.jl recipe. (#155) (korsbo)
• Fix to add\_hc\_template (#154) (TorkelE)
• Fix dp errors (#153) (TorkelE)

v3.11.0

v3.11.0 (2019-09-14)

Diff since v3.10.0

Merged pull requests:

• only require 1.0 (#151) (ChrisRackauckas)

v3.10.0

v3.10.0 (2019-09-07)

Diff since v3.9.1

Closed issues:

• stability does not seems to correct when directly compared with ODE plots (#146)

v3.9.1

v3.9.1 (2019-08-15)

Diff since v3.9.0

Closed issues:

• bifurcation_grid_2d and bifurcation_grid_diagram does not seem to work. (#145)

Merged pull requests:

• Fix test dependencies and update Project.toml (#149) (devmotion)
• === for nothing checks (#148) (isaacsas)
• Fixing stability calculations for systems with constraints (#147) (TorkelE)
• Fix constraints in README (#144) (ChrisRackauckas)