Skip to content

Dynaseq (http://www.sciwhylab.org/dynaseq/) offers dictionaries of 13 DNA confromational parameters for an exhaustive set of pentamers in form of static shape which represents an average shape of the pentamer and shape ensemble which incorporates the dynamic aspect of structure to generate the DNA shape profiles.

Notifications You must be signed in to change notification settings

Sciwhylab/DynaSeq

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

7 Commits
 
 
 
 
 
 
 
 
 
 

Repository files navigation

DynaSeq

Dynaseq (http://www.sciwhylab.org/dynaseq/) offers dictionaries of 13 DNA confromational parameters for an exhaustive set of pentamers in form of static shape which represents an average shape of the pentamer and shape ensemble which incorporates the dynamic aspect of structure to generate the DNA shape profiles.

To read more about the design and concept or to cite, refer to Andrabi M, Hutchins AP, Miranda-Saavedra D, Kono H, Nussinov R, Mizuguchi K, Ahmad S. Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences. Sci Rep. 2017 Jun 22;7(1):4071. doi: 10.1038/s41598-017-03199-6. PMID: 28642456; PMCID: PMC5481346.

About

Dynaseq (http://www.sciwhylab.org/dynaseq/) offers dictionaries of 13 DNA confromational parameters for an exhaustive set of pentamers in form of static shape which represents an average shape of the pentamer and shape ensemble which incorporates the dynamic aspect of structure to generate the DNA shape profiles.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages

  • R 100.0%