v0.2.2

- remove `LSTMMTL2EDAGModel`, `EventTableForIndependentTypeCombination`, `DEEMultiStepTriggeringFeatureConverter` and `DEEMultiStepTriggeringFeature` which are redundant.
- Update test cases via `zheng2019_trigger_graph` schema.
- Codes are formatted by `black`.

.coveragerc

@@ -0,0 +1,5 @@
+[run]
+omit = *tests*
+
+[report]
+omit = *test*

.flake8

@@ -0,0 +1,14 @@
+[flake8]
+ignore=
+    ; line too long
+    E501,
+    ; imported but unused
+    F401,
+    ; line break before binary operator
+    W503,
+    ; do not assign a lambda expression, use a def
+    E731,
+    ; whitespace before ':'
+    E203,
+    ; invalid escape sequence
+    W605

.github/workflows/build.yml

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+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: DocEE
+
+on:
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: [ main ]
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [3.7]
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v2
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -r requirements.txt
+        pip install coverage codecov pytest flake8 black
+        pip install -e .
+    - name: Test
+      run: |
+        coverage run -m pytest -vv --durations=0 .
+        coverage report -m
+        flake8
+    - uses: codecov/codecov-action@v1
+      with:
+        token: ${{ secrets.CODECOV_TOKEN }} # not required for public repos
+        fail_ci_if_error: false
+        verbose: true

.gitignore

@@ -0,0 +1,190 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# DEE
+.idea/
+.pytype/
+.vscode/
+Data/*.png
+Data/typed_*.json
+Data/sample_train.json
+Data/train.json
+Data/dev.json
+Data/test.json
+Data/dev_field2ents.json
+Exps/
+Notebooks/
+Summary/
+.Summary/
+Exps/debug/
+*.log
+debug_dp.py
+tmp.tp
+debug.py
+gold.png
+No Title.png
+test_case2.png
+dee/dee_*.py
+dee/base_task.py
+dee/ner_model.py
+dee/ner_task.py
+dee/transformer.py
+debug.log
+bak/
+tmp.tmp
+debug.sh
+send_message.py
+nohup.out
+Results/
+MidOutput/
+runs/
+Data/DuEEData/*.json
+Data/DuEEData/*.pdf
+Data/DuEEData/*.docx
+failed_decoding*.json
+dump.json
+dee_eval.overall.pred_span.TriggerAwarePrunedCompleteGraph.99.pkl
+luge_with_*.json
+luge_without_*.json
+ppsed_*.json
+luge_*.json
+Data/RAMS/*.jsonlines
+Data/RAMS/typed_*.json
+cache/
+RECORDS.md