yeast 9.0.2 #304
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| name: memote history | |
| on: push | |
| jobs: | |
| memote-history: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| # MEMOTE wants to fetch all branches | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python 3 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.9" | |
| - name: Install memote | |
| run: pip install -r code/requirements/ci-requirements.txt | |
| - name: Checkout repo for gh-pages branch | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: ${{ github.repository }} | |
| ref: gh-pages | |
| path: gh-pages-repo | |
| # - name: Convert model | |
| # run: | | |
| # touch .env | |
| # python -c 'import code.io as io; model = io.read_yeast_model(make_bigg_compliant=True); io.write_yeast_model(model)' | |
| - name: Memote short run | |
| run: | | |
| memote run --ignore-git --skip-unchanged --solver-timeout 30 | |
| - name: Compute Memote history on push | |
| run: | | |
| # Generate the history report on the deployment branch | |
| git config --global user.name "memote-bot" | |
| memote report history --filename="gh-pages-repo/history_report.html" | |
| - name: Fetch async changes in gh-pages | |
| run: | | |
| cd gh-pages-repo | |
| git pull | |
| - name: Auto-commit results | |
| uses: stefanzweifel/git-auto-commit-action@v4 | |
| with: | |
| commit_user_name: memote-bot | |
| commit_message: "chore: update memote history report" | |
| file_pattern: history_report.html | |
| branch: gh-pages | |
| repository: gh-pages-repo | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |