Add mets concentration from ymdb #221
Workflow file for this run
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name: YAML validation | |
on: | |
push: | |
branches: [develop] | |
pull_request: | |
branches: [main, develop] | |
jobs: | |
yaml-validation: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v3 | |
- name: YAML Lint | |
uses: ibiqlik/action-yamllint@v1 | |
with: | |
## File(s) or Directory, separate by space if multiple files or folder are specified | |
file_or_dir: model/ | |
## Custom configuration (as YAML source) | |
config_data: "{extends: default, rules: {line-length: disable}}" | |
## Format for parsing output [parsable,standard,colored,auto] | |
# format: # optional, default is colored | |
## Return non-zero exit code on warnings as well as errors | |
# strict: # optional, default is false | |
- name: Import with cobrapy | |
uses: addnab/docker-run-action@v3 | |
with: | |
image: ghcr.io/metabolicatlas/memote-docker:0.13 | |
options: -v ${{ github.workspace }}:/opt | |
shell: bash | |
run: | | |
cd /opt | |
python -c "import cobra ; cobra.io.load_yaml_model('model/yeast-GEM.yml')" |