Make MPI routines more restrictive and improve their docs #457
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: build | |
| on: | |
| push: | |
| branches: [ unstable, '[0-9]+.[0-9]+.x' ] | |
| pull_request: | |
| branches: [ unstable, '[0-9]+.[0-9]+.x' ] | |
| workflow_call: | |
| workflow_dispatch: | |
| env: | |
| CMAKE_C_COMPILER_LAUNCHER: ccache | |
| CMAKE_CXX_COMPILER_LAUNCHER: ccache | |
| CCACHE_COMPILERCHECK: content | |
| CCACHE_BASEDIR: ${{ github.workspace }} | |
| CCACHE_DIR: ${{ github.workspace }}/.ccache | |
| CCACHE_MAXSIZE: 500M | |
| CCACHE_SLOPPINESS: pch_defines,time_macros,include_file_mtime,include_file_ctime | |
| CCACHE_COMPRESS: "1" | |
| CCACHE_COMPRESSLEVEL: "1" | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - {os: ubuntu-24.04, cc: gcc, cxx: g++, doc: OFF, cov: ON} | |
| - {os: ubuntu-24.04, cc: clang, cxx: clang++, doc: OFF, cov: OFF} | |
| - {os: macos-14, cc: gcc-14, cxx: g++-14, doc: OFF, cov: OFF} | |
| - {os: macos-14, cc: clang, cxx: clang++, doc: ON, cov: OFF} | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/cache/restore@v4 | |
| with: | |
| path: ${{ env.CCACHE_DIR }} | |
| key: ccache-${{ matrix.os }}-${{ matrix.cc }}-${{ github.run_id }} | |
| restore-keys: | |
| ccache-${{ matrix.os }}-${{ matrix.cc }}- | |
| - name: Install ubuntu dependencies | |
| if: ${{ contains(matrix.os, 'ubuntu') }} | |
| run: > | |
| sudo apt-get update && | |
| sudo apt-get install lsb-release wget software-properties-common && | |
| sudo apt-get install | |
| ccache | |
| clang | |
| g++ | |
| gfortran | |
| hdf5-tools | |
| libblas-dev | |
| libclang-dev | |
| libc++-dev | |
| libc++abi-dev | |
| libomp-dev | |
| libfftw3-dev | |
| libgfortran5 | |
| libgmp-dev | |
| libhdf5-dev | |
| liblapack-dev | |
| libopenmpi-dev | |
| openmpi-bin | |
| openmpi-common | |
| openmpi-doc | |
| python3-clang | |
| python3-dev | |
| python3-mako | |
| python3-mpi4py | |
| python3-numpy | |
| python3-pip | |
| python3-scipy | |
| python3-sphinx | |
| python3-nbsphinx | |
| - name: Set up virtualenv | |
| run: | | |
| mkdir $HOME/.venv | |
| python3 -m venv --system-site-packages $HOME/.venv/my_python | |
| source $HOME/.venv/my_python/bin/activate | |
| echo "VIRTUAL_ENV=$VIRTUAL_ENV" >> $GITHUB_ENV | |
| echo "PATH=$PATH" >> $GITHUB_ENV | |
| - name: Install homebrew dependencies | |
| if: ${{ contains(matrix.os, 'macos') }} | |
| run: | | |
| brew update | |
| brew install ccache gcc llvm hdf5 open-mpi openblas doxygen | |
| pip install mako numpy scipy mpi4py | |
| pip install -r requirements.txt | |
| echo "PATH=$(brew --prefix llvm)/bin:$(brew --prefix gcc)/bin:$PATH" >> $GITHUB_ENV | |
| echo "PYTHONPATH=$(brew --prefix llvm)/lib/python3.13/site-packages" >> $GITHUB_ENV | |
| - name: Add clang CXXFLAGS | |
| if: ${{ contains(matrix.cxx, 'clang') }} | |
| run: | | |
| echo "CXXFLAGS=-stdlib=libc++" >> $GITHUB_ENV | |
| - name: Add clang LDFLAGS for macos to link against brew's libc++ | |
| if: ${{ contains(matrix.os, 'macos') && contains(matrix.cxx, 'clang') }} | |
| run: | | |
| echo 'LDFLAGS="-L$(brew --prefix llvm)/lib/c++ -L$(brew --prefix llvm)/lib -lunwind"' >> $GITHUB_ENV | |
| - name: Set up test coverage | |
| if: matrix.cov == 'ON' | |
| run: | | |
| pip install gcovr | |
| echo "CXXFLAGS=--coverage" >> $GITHUB_ENV | |
| - name: Prepare source files for doxygen | |
| if: matrix.doc == 'ON' | |
| working-directory: ./c++/nda | |
| run: | | |
| sed -e '/#include .*impl.*.hpp/{r _impl_basic_array_view_common.hpp' -e 'd' -e '}' basic_array.hpp > tmp_basic_array.hpp | |
| sed -e '/#include .*impl.*.hpp/{r _impl_basic_array_view_common.hpp' -e 'd' -e '}' basic_array_view.hpp > tmp_basic_array_view.hpp | |
| mv tmp_basic_array.hpp basic_array.hpp | |
| mv tmp_basic_array_view.hpp basic_array_view.hpp | |
| - name: Build nda | |
| env: | |
| CC: ${{ matrix.cc }} | |
| CXX: ${{ matrix.cxx }} | |
| run: | | |
| mkdir build && cd build && cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/install -DPythonSupport=ON -DBuild_Documentation=${{ matrix.doc }} -DCMAKE_BUILD_TYPE=${{ matrix.cov == 'ON' && 'Debug' || 'Release' }} | |
| make -j2 || make -j1 VERBOSE=1 | |
| - name: Test nda | |
| env: | |
| OPENBLAS_NUM_THREADS: "1" | |
| run: | | |
| cd build | |
| ctest -j2 --output-on-failure | |
| - name: Generate test coverage HTML output | |
| if: matrix.cov == 'ON' | |
| run: | | |
| cd build | |
| mkdir coverage | |
| gcovr --gcov-executable "gcov" --root ../c++ --html-details -o coverage/coverage.html . | |
| - name: ccache statistics | |
| if: always() | |
| run: ccache -sv | |
| - uses: actions/cache/save@v4 | |
| if: always() | |
| with: | |
| path: ${{ env.CCACHE_DIR }} | |
| key: ccache-${{ matrix.os }}-${{ matrix.cc }}-${{ github.run_id }} | |
| - name: Deploy documentation | |
| if: matrix.doc == 'ON' && github.ref == 'refs/heads/unstable' | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| with: | |
| folder: build/doc/html | |
| branch: github.io | |
| target-folder: docs/unstable | |
| - name: Deploy test coverage | |
| if: matrix.cov == 'ON' && github.ref == 'refs/heads/unstable' | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| with: | |
| folder: build/coverage | |
| branch: github.io | |
| target-folder: docs/coverage |